Gordonia phage Halo3
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Detailed Information for Phage Halo3
Discovery Information
Isolation HostGordonia terrae CAG3
Found ByHaley Chavey
Year Found2021
Location FoundWamego, KS United States
Finding InstitutionKansas State University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature25°C
GPS Coordinates39.24492 N, 96.316794 W Map
Discovery NotesSample was collected from the floor of a chicken coop about an inch down. Soil was fine or powdery and a light brown color. Organic matter and small pieces of straw hay were present
Naming NotesMy nickname and my lucky number.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 18, 2022
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage938
Genome length (bp)59182
Character of genome endsCircularly Permuted
GC Content67.9%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDC
SubclusterDC1
Cluster Life CycleTemperate
Lysogeny NotesPhage has lysogen presence. This is confirmed by the result of patch assays.
Other Cluster Members
Annotating InstitutionFranklin Pierce University
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Halo3_1
(terminase small subunit)

Halo3_2

Halo3_3

Halo3_4

Halo3_5
(terminase large subunit)

Halo3_6

Halo3_7

Halo3_8
(ASC-1 transcription coactivator)

Halo3_9

Halo3_10

Halo3_11
(polynucleotide kinase)

Halo3_12

Halo3_13
(portal protein)

Halo3_14

Halo3_15
(ADP-ribosyltransferase)

Halo3_16

Halo3_17

Halo3_18
(RNA ligase)

Halo3_19

Halo3_20
(major capsid hexamer protein)

Halo3_21
(major capsid pentamer protein)

Halo3_22

Halo3_23
(major tail protein)

Halo3_24
(head-to-tail adaptor)

Halo3_25

Halo3_26

Halo3_27

Halo3_28
(tail assembly chaperone)

Halo3_29

Halo3_30
(tape measure protein)

Halo3_31
(minor tail protein)

Halo3_32
(minor tail protein)

Halo3_33

Halo3_34
(minor tail protein)

Halo3_35

Halo3_36
(minor tail protein)

Halo3_37

Halo3_38

Halo3_39
(lysin A)

Halo3_40
(holin)

Halo3_41

Halo3_42

Halo3_43

Halo3_44
(lysin B)

Halo3_45

Halo3_46
(serine integrase)

Halo3_47

Halo3_48
(tyrosine integrase)

Halo3_49
(immunity repressor)

Halo3_50
(helix-turn-helix DNA binding protein)

Halo3_51

Halo3_52

Halo3_53

Halo3_54
(RecE-like exonuclease)

Halo3_55
(RecT-like DNA pairing protein)

Halo3_56

Halo3_57

Halo3_58
(DNA methyltransferase)

Halo3_59
(helix-turn-helix DNA binding domain protein)

Halo3_60
(helix-turn-helix DNA binding domain protein)

Halo3_61

Halo3_62
(RuvC-like resolvase)

Halo3_63

Halo3_64

Halo3_65

Halo3_66

Halo3_67

Halo3_68

Halo3_69

Halo3_70

Halo3_71

Halo3_72

Halo3_73

Halo3_74

Halo3_75

Halo3_76

Halo3_77

Halo3_78

Halo3_79

Halo3_80
(DNA methyltransferase)

Halo3_81

Halo3_82

Halo3_83

Halo3_84
(DnaJ-like chaperonin)

Halo3_85
(helix-turn-helix DNA binding domain protein)

Halo3_86

Halo3_87

Halo3_88

Halo3_89

Halo3_90

Halo3_91

Halo3_92

Halo3_93

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionOR521081
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 1x10^10 pfu/mL
Pitt Freezer Box# 140
Pitt Freezer Box Grid# A1
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload