Gordonia phage Hortihabitatio
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Detailed Information for Phage Hortihabitatio
Discovery Information
Isolation HostGordonia rubripertincta NRRL B-16540
Found ByIvan Zabello
Year Found2023
Location FoundFairfax, VA United States of America
Finding InstitutionGeorge Mason University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation Temperature26°C
GPS Coordinates38.79869 N, 77.3121 W Map
Discovery NotesThe soil being moist and not dry, the sample was gathered into a 50 mL Falcon tube, with close proximity to a bundle of cucumber and tomato plants, at approximately 5:50 PM on 08/31/23.
Naming NotesThe soil sample was collected from a garden patch containing cucumber and tomato plants. Being that "horti" is Latin for "garden" and "habitatio" is Latin for "dwelling", I thought that "Hortihabitatio" would be an appropriate name.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 16, 2024
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Sequencer UsedIllumina MiSeq
Read TypeSingle-end reads
Read Length150 bp
Approximate Shotgun Coverage1477
Genome length (bp)59850
Character of genome ends3' Sticky Overhang
Overhang Length9 bases
Overhang SequenceCGCCGCCCT
GC Content52.5%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDJ
Subcluster--
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionGeorge Mason University
Annotation StatusIn GenBank
Number of Genes89
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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Hortihabitatio_1

Hortihabitatio_2

Hortihabitatio_3

Hortihabitatio_4
(hydrolase)

Hortihabitatio_5

Hortihabitatio_6

Hortihabitatio_7

Hortihabitatio_8

Hortihabitatio_9

Hortihabitatio_10

Hortihabitatio_11
(HNH endonuclease)

Hortihabitatio_12
(lysin A)

Hortihabitatio_13
(holin)

Hortihabitatio_14

Hortihabitatio_15

Hortihabitatio_16
(terminase)

Hortihabitatio_17

Hortihabitatio_18

Hortihabitatio_19

Hortihabitatio_20
(portal protein)

Hortihabitatio_21

Hortihabitatio_22
(major capsid and protease fusion protein)

Hortihabitatio_23

Hortihabitatio_24
(tail terminator)

Hortihabitatio_25
(major tail protein)

Hortihabitatio_26

Hortihabitatio_27
(major tail protein)

Hortihabitatio_28

Hortihabitatio_29

Hortihabitatio_30
(lysin B)

Hortihabitatio_31

Hortihabitatio_32
(tape measure protein)

Hortihabitatio_33
(minor tail protein)

Hortihabitatio_34
(minor tail protein)

Hortihabitatio_35

Hortihabitatio_36

Hortihabitatio_37

Hortihabitatio_38

Hortihabitatio_39

Hortihabitatio_40

Hortihabitatio_41

Hortihabitatio_42

Hortihabitatio_43

Hortihabitatio_44

Hortihabitatio_45

Hortihabitatio_46

Hortihabitatio_47

Hortihabitatio_48

Hortihabitatio_49

Hortihabitatio_50

Hortihabitatio_51

Hortihabitatio_52

Hortihabitatio_53

Hortihabitatio_54

Hortihabitatio_55

Hortihabitatio_56

Hortihabitatio_57

Hortihabitatio_58

Hortihabitatio_59

Hortihabitatio_60

Hortihabitatio_61

Hortihabitatio_62

Hortihabitatio_63
(DNA primase/polymerase)

Hortihabitatio_64

Hortihabitatio_65

Hortihabitatio_66
(deoxycytidylate deaminase)

Hortihabitatio_67

Hortihabitatio_68

Hortihabitatio_69
(SSB protein)

Hortihabitatio_70

Hortihabitatio_71
(PnuC-like nicotinamide riboside transporter)

Hortihabitatio_72

Hortihabitatio_73
(ThyX-like thymidylate synthase)

Hortihabitatio_74

Hortihabitatio_75

Hortihabitatio_76

Hortihabitatio_77

Hortihabitatio_78

Hortihabitatio_79

Hortihabitatio_80

Hortihabitatio_81

Hortihabitatio_82

Hortihabitatio_83

Hortihabitatio_84
(DNA helicase)

Hortihabitatio_85
(HNH endonuclease)

Hortihabitatio_86
(VRR-Nuc domain protein)

Hortihabitatio_87
(Cas4 family exonuclease)

Hortihabitatio_88
(helix-turn-helix DNA binding domain)

Hortihabitatio_89

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionPX315714
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 169
Pitt Freezer Box Grid# G11
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload