Detailed Information for Phage OhMyWard |
Discovery Information |
Isolation Host | Gordonia rubripertincta NRRL B-16540 |
Found By | Cassandra Ward |
Year Found | 2019 |
Location Found | Riverside, CA USA |
Finding Institution | La Sierra University |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Yes |
Isolation Temperature | 22°C |
GPS Coordinates | 33.9125 N, 117.499 W Map |
Discovery Notes | The sample was collected under a Kumquat tree. I took from about 5 centimeters in the soil. The soil was damp and dark with some organic material in it. |
Naming Notes | I wanted to do a play on words with my name and my last name is Ward so I named my phage OhMyWard |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Apr 8, 2019 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina |
Approximate Shotgun Coverage | 2236 |
Genome length (bp) | 60978 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 9 bases |
Overhang Sequence | CGCCGCCCT |
GC Content | 52.2% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | DJ |
Subcluster | -- |
Cluster Life Cycle | Lytic |
Other Cluster Members |
|
Annotating Institution | La Sierra University |
Annotation Status | In GenBank |
Plaque Notes | The plaques from my phage are very small and lytic. |
Number of Genes | 86 |
Number of tRNAs | 0 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List |
|
Submitted Minimal DNA Master File | Download |
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | MN284896 |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Archived |
Pitt Freezer Box# |
92 |
Pitt Freezer Box Grid# |
H12 |
Available Files |
Plaque Picture | Download |
Restriction Digest Picture | Download |
EM Picture | Download |
GenBank File for Phamerator | Download |