| Detailed Information for Phage Perkunas | |
| Discovery Information | |
| Isolation Host | Gordonia rubripertincta NRRL B-16540 |
| Former names | Abaddon |
| Found By | Grace Murley |
| Year Found | 2023 |
| Location Found | Temple Terrace, FL United States |
| Finding Institution | University of South Florida |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | No |
| Isolation Temperature | 32°C |
| GPS Coordinates | 28.023 N, 82.4 W Map |
| Discovery Notes | Conditions upon discovery: 32 degrees Celsius, damp/wet mushy soil that received little to no light, humidity at 60 %, time of collection at 2:19 PM This phage was located beside a storm drain and the combination of lack of sunlight and the recent rainstorm had left the soil extremely damp. |
| Naming Notes | Perkūnas is the name of the Lithuanian God of thunder and storms. Being that I found this phage by a storm drain, I found this name fitting. The Lithuanian origin was chosen because I'm 25% Lithuanian. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Dec 6, 2023 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina Sequencing |
| Approximate Shotgun Coverage | 1358 |
| Genome length (bp) | 59575 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 9 bases |
| Overhang Sequence | CGCCGCTCT |
| GC Content | 51.0% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | DJ |
| Subcluster | -- |
| Cluster Life Cycle | Lytic |
| Lysogeny Notes | infected Gordonia Rubripertincta (host), Gordonia Terrae, and Gordonia Westfalica |
| Other Cluster Members |
Click to ViewAflac AlainaMarie Arataki Artorias Avazak BluerMoon Burley Captrips Capybara Chikenjars Conley Crocheter Duffington Eddiemania EndAve Fazel Figliar FortCran Gill Gravy Gusicorn Hortihabitatio Hydrus Jodelie19 JulesRay Kenosha Kerry Madvan Magel Mossy Mysticmoon Nadmeg Nithya NoPickles Odesza OhMyWard OlgasClover Perkunas Petito Phepper Pherobrine Rickmore Roney Runhaar Schwartz33 Secretariat ShaggyRogers Tanis TenaciousP Untouchable Vardy Zeph |
| Annotating Institution | University of South Florida |
| Annotation Status | In GenBank |
| Plaque Notes | Plaques are clear and exist in large and small plaques, mainly large. |
| Morphotype | Siphoviridae |
| Number of Genes | 94 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewPerkunas_1 Perkunas_2 Perkunas_3 Perkunas_4 Perkunas_5 Perkunas_6 Perkunas_7 Perkunas_8 Perkunas_9 Perkunas_10 Perkunas_11 Perkunas_12 Perkunas_13 Perkunas_14 Perkunas_15 Perkunas_16 Perkunas_17 Perkunas_18 Perkunas_19 Perkunas_20 Perkunas_21 Perkunas_22 Perkunas_23 Perkunas_24 Perkunas_25 Perkunas_26 Perkunas_27 Perkunas_28 Perkunas_29 Perkunas_30 Perkunas_31 Perkunas_32 Perkunas_33 Perkunas_34 Perkunas_35 Perkunas_36 Perkunas_37 Perkunas_38 Perkunas_39 Perkunas_40 Perkunas_41 Perkunas_42 Perkunas_43 Perkunas_44 Perkunas_45 Perkunas_46 Perkunas_47 Perkunas_48 Perkunas_49 Perkunas_50 Perkunas_51 Perkunas_52 Perkunas_53 Perkunas_54 Perkunas_55 Perkunas_56 Perkunas_57 Perkunas_58 Perkunas_59 Perkunas_60 Perkunas_61 Perkunas_62 Perkunas_63 Perkunas_64 Perkunas_65 Perkunas_66 Perkunas_67 Perkunas_68 Perkunas_69 Perkunas_70 Perkunas_71 Perkunas_72 Perkunas_73 Perkunas_74 Perkunas_75 Perkunas_76 Perkunas_77 Perkunas_78 Perkunas_79 Perkunas_80 Perkunas_81 Perkunas_82 Perkunas_83 Perkunas_84 Perkunas_85 Perkunas_86 Perkunas_87 Perkunas_88 Perkunas_89 Perkunas_90 Perkunas_91 Perkunas_92 Perkunas_93 Perkunas_94 |
| Submitted Minimal DNA Master File | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | PP978885 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| SEA Lysate Titer | 11000000000 PFU/ml |
| Pitt Freezer Box# | 172 |
| Pitt Freezer Box Grid# | G10 |
| Available Files | |
| Plaque Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |
