Mycobacterium phage Superphikiman
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Detailed Information for Phage Superphikiman
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByPratik Pradhan
Year Found2015
Location FoundPhiladelphia, PA USA
Finding InstitutionDrexel University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation TemperatureNot entered
GPS Coordinates39.955 N, 75.187667 W Map
Discovery NotesTime: 5:06 PM
Depth: 3 inches
Temperature: 72 degrees
Found outside of Lebow Hall on Drexel University Campus
Naming NotesThe name came from my elementary school email "supertikiman", and instead I changed it to superphikiman.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMar 24, 2016
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage335
Genome length (bp)109799
Character of genome ends3' Sticky Overhang
Overhang Length4 bases
Overhang SequenceATCC
GC Content61.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterJ
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUnknown or unassigned
Annotation StatusIn GenBank
Plaque NotesI hate circular, clear, 1 mm plaques and they were very aggressive in their growth.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

Superphikiman_1
(HNH endonuclease)

Superphikiman_2

Superphikiman_3

Superphikiman_4

Superphikiman_5
(HNH endonuclease)

Superphikiman_6

Superphikiman_7

Superphikiman_8

Superphikiman_9
(terminase small subunit)

Superphikiman_10
(terminase large subunit)

Superphikiman_11

Superphikiman_12
(portal protein)

Superphikiman_13
(capsid maturation protease)

Superphikiman_14
(major capsid protein)

Superphikiman_15
(methyltransferase)

Superphikiman_16
(glycosyltransferase)

Superphikiman_17
(glycosyltransferase)

Superphikiman_18

Superphikiman_19

Superphikiman_20

Superphikiman_21
(glycosyltransferase)

Superphikiman_22

Superphikiman_23
(head-to-tail adaptor)

Superphikiman_24
(head-to-tail stopper)

Superphikiman_25

Superphikiman_26
(tail terminator)

Superphikiman_27

Superphikiman_28

Superphikiman_29
(major tail protein)

Superphikiman_30
(tail assembly chaperone)

Superphikiman_31
(tail assembly chaperone)

Superphikiman_32
(tapemeasure protein)

Superphikiman_33
(minor tail protein)

Superphikiman_34
(minor tail protein)

Superphikiman_35
(minor tail protein)

Superphikiman_36
(minor tail protein)

Superphikiman_37
(minor tail protein)

Superphikiman_38
(minor tail protein)

Superphikiman_39

Superphikiman_40
(helix-turn-helix DNA binding domain protein)

Superphikiman_41

Superphikiman_42

Superphikiman_43

Superphikiman_44

Superphikiman_45

Superphikiman_46
(HNH endonuclease)

Superphikiman_47
(lysin A)

Superphikiman_48
(lysin B)

Superphikiman_49
(holin)

Superphikiman_50

Superphikiman_51
(glutaredoxin)

Superphikiman_52

Superphikiman_53

Superphikiman_54

Superphikiman_55

Superphikiman_56

Superphikiman_57
(DNA bridging protein)

Superphikiman_58

Superphikiman_59

Superphikiman_60

Superphikiman_61

Superphikiman_62

Superphikiman_63

Superphikiman_64

Superphikiman_65

Superphikiman_66

Superphikiman_67

Superphikiman_68

Superphikiman_69

Superphikiman_70

Superphikiman_71

Superphikiman_72

Superphikiman_73

Superphikiman_74

Superphikiman_75

Superphikiman_76

Superphikiman_77

Superphikiman_78

Superphikiman_79

Superphikiman_80

Superphikiman_81

Superphikiman_82

Superphikiman_83
(excise)

Superphikiman_84
(integrase)

Superphikiman_85

Superphikiman_86

Superphikiman_87

Superphikiman_88
(membrane protein)

Superphikiman_89

Superphikiman_90
(helix-turn-helix DNA binding domain protein)

Superphikiman_91

Superphikiman_92

Superphikiman_93
(LipC-like lipase)

Superphikiman_94

Superphikiman_95

Superphikiman_96

Superphikiman_97

Superphikiman_98

Superphikiman_99

Superphikiman_100

Superphikiman_101

Superphikiman_102

Superphikiman_103

Superphikiman_104

Superphikiman_105

Superphikiman_106

Superphikiman_107

Superphikiman_108

Superphikiman_109
(AddA-like dsDNA break-binding protein)

Superphikiman_110

Superphikiman_111

Superphikiman_112

Superphikiman_113
(HNH endonuclease)

Superphikiman_114
(DNA methylase)

Superphikiman_115
(HNH endonuclease)

Superphikiman_116

Superphikiman_117

Superphikiman_118

Superphikiman_119

Superphikiman_120

Superphikiman_121

Superphikiman_122
(polynucleotide kinase)

Superphikiman_123

Superphikiman_124

Superphikiman_125
(endonuclease VII)

Superphikiman_126
(WhiB family transcription factor)

Superphikiman_127
(helix-turn-helix DNA binding domain protein)

Superphikiman_128

Superphikiman_129

Superphikiman_130

Superphikiman_131

Superphikiman_132

Superphikiman_133

Superphikiman_134

Superphikiman_135
(DNA primase/polymerase)

Superphikiman_136

Superphikiman_137

Superphikiman_138

Superphikiman_139

Superphikiman_140

Superphikiman_141

Superphikiman_142

Superphikiman_143

Superphikiman_144
(DNA helicase)

Superphikiman_145
(HNH endonuclease)

Superphikiman_146

Superphikiman_147

Superphikiman_148
(metallophosphoesterase)

Superphikiman_149
(HNH endonuclease)

Superphikiman_150

Superphikiman_151

Superphikiman_152

Superphikiman_153
(RNA ligase)

Superphikiman_154
(protease)

Superphikiman_155
(DNA polymerase III subunit)

Superphikiman_156

Superphikiman_157

Superphikiman_158

Superphikiman_159

Superphikiman_160

Superphikiman_161

Superphikiman_162
(nucleotide pyrophosphohydrolase)

Superphikiman_163
(HNH endonuclease)

Superphikiman_164

Superphikiman_165

Superphikiman_166

Superphikiman_167

Superphikiman_168

Superphikiman_169

Superphikiman_170

Superphikiman_171

Superphikiman_172

Superphikiman_173

Superphikiman_174

Superphikiman_175

Superphikiman_176

Superphikiman_177

Superphikiman_178

Superphikiman_179

Superphikiman_180

Superphikiman_181

Superphikiman_183

Superphikiman_184

Superphikiman_185

Superphikiman_186

Superphikiman_188

Superphikiman_189

Superphikiman_190

Superphikiman_191
(immunity repressor)

Superphikiman_192

Superphikiman_193

Superphikiman_194

Superphikiman_195

Superphikiman_196

Superphikiman_197

Superphikiman_198
(DNA translocase)

Superphikiman_199

Superphikiman_200

Superphikiman_201

Superphikiman_202

Superphikiman_203
(Ku dsDNA break-binding protein)

Superphikiman_204

Superphikiman_205

Superphikiman_206

Superphikiman_207

Superphikiman_208

Superphikiman_209

Superphikiman_210
(helix-turn-helix DNA binding domain protein)

Superphikiman_211

Superphikiman_212

Superphikiman_213

Superphikiman_214

Superphikiman_215

Superphikiman_216

Superphikiman_217

Superphikiman_218

Superphikiman_219

Superphikiman_220

Superphikiman_221

Superphikiman_222

Superphikiman_223

Superphikiman_224

Superphikiman_225

Superphikiman_226

Superphikiman_227

Superphikiman_228

Superphikiman_229

Superphikiman_230

Superphikiman_231

Superphikiman_232

Superphikiman_233

Superphikiman_234

Superphikiman_235

Superphikiman_236

Superphikiman_237

Superphikiman_238

Superphikiman_239

Superphikiman_240

Superphikiman_241

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMF919534
Refseq NumberNone yet
Published in PaperPradhan P et al 2018, Genome Announcements: Complete Genome Sequence of Cluster J Mycobacteriophage Superphikiman
Archiving Info
Archiving status Archived
Pitt Freezer Box# 25
Pitt Freezer Box Grid# H1
Available Files
Restriction Digest PictureDownload
Final DNAMaster FileDownload
GenBank File for PhameratorDownload