Detailed Information for Phage Tonitrus |
Discovery Information |
Isolation Host | Rhodococcus equi NRRL B-16538 |
Duplicates of this Phage | Flodtrolde |
Found By | Charles Tavera |
Year Found | 2023 |
Location Found | Grand Rapids, MI United States |
Finding Institution | Calvin University |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Yes |
Isolation Temperature | 30°C |
GPS Coordinates | 42.93155 N, 85.586913 W Map |
Discovery Notes | Soil sample was collected from area in between Schultze dorm and Commons dining hall. The soil was very dry and sandy with minimal foliage/ roots. |
Naming Notes | Tonitrus is Latin for thunder. There was a thunderstorm approaching when I collected my soil sample. Also, the plaques are turbid and look like clouds, which remind of thunder. |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Jan 24, 2024 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina Sequencing |
Approximate Shotgun Coverage | 1081 |
Genome length (bp) | 57971 |
Character of genome ends | Circularly Permuted |
GC Content | 69.0% |
Sequencing Notes | When sequenced, about 10% of the reads were a 100% match for REQ3. |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | Singleton |
Subcluster | -- |
Cluster Life Cycle | Unknown |
Other Cluster Members |
|
Annotating Institution | Calvin University |
Annotation Status | In GenBank |
Plaque Notes | Plaques are quite small, roughly 1 mm in diameter. Plaques were cloudy with unclear, rough borders. |
Morphotype | Siphoviridae |
Has been Phamerated? | Yes |
Gene List |
|
Submitted Annotation in DNA Master Format | Download |
Submitted Minimal DNA Master File | Download |
Author List | Download |
Annotation Cover Sheet | Download |
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | PP978825 |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Archived |
Pitt Freezer Box# |
185 |
Pitt Freezer Box Grid# |
C1 |
Available Files |
Plaque Picture | Download |
EM Picture | Download |
GenBank File for Phamerator | Download |