Rhodococcus phage Tonitrus
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Detailed Information for Phage Tonitrus
Discovery Information
Isolation HostRhodococcus equi NRRL B-16538
Duplicates of this PhageFlodtrolde
Found ByCharles Tavera
Year Found2023
Location FoundGrand Rapids, MI United States
Finding InstitutionCalvin University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature30°C
GPS Coordinates42.93155 N, 85.586913 W Map
Discovery NotesSoil sample was collected from area in between Schultze dorm and Commons dining hall. The soil was very dry and sandy with minimal foliage/ roots.
Naming NotesTonitrus is Latin for thunder. There was a thunderstorm approaching when I collected my soil sample. Also, the plaques are turbid and look like clouds, which remind of thunder.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 24, 2024
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1081
Genome length (bp)57971
Character of genome endsCircularly Permuted
GC Content69.0%
Sequencing NotesWhen sequenced, about 10% of the reads were a 100% match for REQ3.
Fasta file available?Yes: Download fasta file
Characterization
ClusterSingleton
Subcluster--
Cluster Life CycleUnknown
Other Cluster Members
Annotating InstitutionCalvin University
Annotation StatusIn GenBank
Plaque NotesPlaques are quite small, roughly 1 mm in diameter. Plaques were cloudy with unclear, rough borders.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

Tonitrus_1
(ParB-like nuclease domain)

Tonitrus_2

Tonitrus_3
(Tet-like J-binding protein)

Tonitrus_4

Tonitrus_5

Tonitrus_6
(aGPT-Pplase2 domain protein)

Tonitrus_7
(adenylate kinase)

Tonitrus_8

Tonitrus_9
(helix-turn-helix DNA binding domain)

Tonitrus_10
(helix-turn-helix DNA binding domain)

Tonitrus_11

Tonitrus_12

Tonitrus_13
(terminase)

Tonitrus_14

Tonitrus_15

Tonitrus_16

Tonitrus_17

Tonitrus_18

Tonitrus_19

Tonitrus_20

Tonitrus_21

Tonitrus_22

Tonitrus_23

Tonitrus_24

Tonitrus_25

Tonitrus_26
(portal protein)

Tonitrus_27

Tonitrus_28

Tonitrus_29

Tonitrus_30
(major capsid hexamer protein)

Tonitrus_31
(major capsid pentamer protein)

Tonitrus_32

Tonitrus_33

Tonitrus_34

Tonitrus_35
(major tail protein)

Tonitrus_36
(minor tail protein)

Tonitrus_37
(head-to-tail adaptor)

Tonitrus_38

Tonitrus_39

Tonitrus_40

Tonitrus_41
(tail assembly chaperone)

Tonitrus_42

Tonitrus_43
(tape measure protein)

Tonitrus_44
(minor tail protein)

Tonitrus_45
(minor tail protein)

Tonitrus_46

Tonitrus_47

Tonitrus_48

Tonitrus_49

Tonitrus_50
(endolysin N-acetylmuramoyl-L-alanine amidase domain)

Tonitrus_51
(peptidase)

Tonitrus_52
(hydrolase)

Tonitrus_53

Tonitrus_54

Tonitrus_55

Tonitrus_56

Tonitrus_57

Tonitrus_58

Tonitrus_59
(helix-turn-helix DNA binding domain)

Tonitrus_60

Tonitrus_61

Tonitrus_62

Tonitrus_63
(helix-turn-helix DNA binding domain)

Tonitrus_64

Tonitrus_65

Tonitrus_66

Tonitrus_67
(Cas4 exonuclease)

Tonitrus_68
(ASCE ATPase)

Tonitrus_69

Tonitrus_70
(HNH endonuclease)

Tonitrus_71

Tonitrus_72

Tonitrus_73

Tonitrus_74

Tonitrus_75
(RusA-like resolvase)

Tonitrus_76

Tonitrus_77

Tonitrus_78

Tonitrus_79

Tonitrus_80

Tonitrus_81

Tonitrus_82

Tonitrus_83

Tonitrus_84

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionPP978825
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 185
Pitt Freezer Box Grid# C1
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload