Streptomyces phage Gilgamesh
Know something about this phage that we don't? Modify its data.
Detailed Information for Phage Gilgamesh
Discovery Information
Isolation HostStreptomyces lividans JI 1326
Found ByMichael Almisry, Madeline Lee
Year Found2015
Location FoundSt Louis, MO USA
Finding InstitutionWashington University in St. Louis
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature22°C
GPS Coordinates38.645 N, 90.311 W Map
Discovery NotesCollected a few feet from a brick gate and pedestrian walkway on the Washington University in St. Louis campus.
Naming NotesGilgamesh is a legendary Sumerian king and the protagonist of what is often cited as the first great literary work, the Epic of Gilgamesh. He's pretty cool.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedAug 3, 2018
Sequencing FacilityThe McDonnell Genome Institute at Washington University
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage136
Genome length (bp)129136
Character of genome endsCircularly Permuted
End Determination NotesNo obvious read buildups in either direction, nor any apparent bumps in coverage.
GC Content71.3%
Fasta file available?Yes: Download fasta file
Characterization
ClusterSingleton
Subcluster--
Cluster Life CycleUnknown
Other Cluster Members
Annotating InstitutionWashington University in St. Louis
Annotation StatusIn GenBank
Plaque NotesVery small plaque size (0.5-0.75 mm in diameter), circular shape, hazy border
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

Gilgamesh_1
(terminase, large subunit)

Gilgamesh_2
(tyrosine integrase)

Gilgamesh_3
(ribbon-helix-helix DNA binding domain)

Gilgamesh_4

Gilgamesh_5

Gilgamesh_6

Gilgamesh_7

Gilgamesh_8

Gilgamesh_9
(membrane protein)

Gilgamesh_10
(FtsK-like DNA translocase)

Gilgamesh_11

Gilgamesh_12

Gilgamesh_13

Gilgamesh_14

Gilgamesh_15
(phosphatase)

Gilgamesh_16

Gilgamesh_17

Gilgamesh_18

Gilgamesh_19

Gilgamesh_20

Gilgamesh_21

Gilgamesh_22

Gilgamesh_23
(RusA-like resolvase (endonuclease))

Gilgamesh_24

Gilgamesh_25

Gilgamesh_26

Gilgamesh_27
(membrane protein)

Gilgamesh_28

Gilgamesh_29

Gilgamesh_30

Gilgamesh_31

Gilgamesh_32
(tyrosine integrase)

Gilgamesh_33
(helix-turn-helix DNA binding domain)

Gilgamesh_34

Gilgamesh_35

Gilgamesh_36

Gilgamesh_37
(helix-turn-helix DNA binding domain)

Gilgamesh_38

Gilgamesh_39

Gilgamesh_40

Gilgamesh_41

Gilgamesh_42
(thymidylate kinase)

Gilgamesh_43
(MutT-like nucleotide pyrophosphohydrolase)

Gilgamesh_44

Gilgamesh_45
(membrane protein)

Gilgamesh_46
(portal and MuF-like fusion protein)

Gilgamesh_47
(membrane protein)

Gilgamesh_48

Gilgamesh_49

Gilgamesh_50

Gilgamesh_51
(ribosome modulation factor)

Gilgamesh_52
(hydrolase)

Gilgamesh_53
(major capsid protein)

Gilgamesh_54

Gilgamesh_55
(metallophosphoesterase)

Gilgamesh_56

Gilgamesh_57

Gilgamesh_58

Gilgamesh_59
(head-to-tail adaptor)

Gilgamesh_60

Gilgamesh_61
(minor capsid protein)

Gilgamesh_62

Gilgamesh_63
(tail terminator)

Gilgamesh_64

Gilgamesh_65
(tail assembly chaperone)

Gilgamesh_66
(tail assembly chaperone)

Gilgamesh_67
(tape measure protein)

Gilgamesh_68
(minor tail protein)

Gilgamesh_69

Gilgamesh_70
(minor tail protein)

Gilgamesh_71

Gilgamesh_72
(glycoside hydrolase)

Gilgamesh_73

Gilgamesh_74
(membrane protein)

Gilgamesh_75

Gilgamesh_76

Gilgamesh_77
(AAA-ATPase)

Gilgamesh_78

Gilgamesh_79
(membrane protein)

Gilgamesh_80
(AAA-ATPase)

Gilgamesh_81
(helix-turn-helix DNA binding domain)

Gilgamesh_82
(helix-turn-helix DNA binding domain)

Gilgamesh_83

Gilgamesh_84
(ParB-like dsDNA partitioning protein)

Gilgamesh_85
(terminase, small subunit)

Gilgamesh_86

Gilgamesh_87
(helix-turn-helix DNA binding domain)

Gilgamesh_88
(lysin A, N-acetylmuramoyl-L-alanine amidase domain)

Gilgamesh_89
(ssDNA binding protein)

Gilgamesh_90

Gilgamesh_91

Gilgamesh_92
(RNA Polymerase Sigma Factor)

Gilgamesh_93

Gilgamesh_94

Gilgamesh_95
(helix-turn-helix DNA binding domain)

Gilgamesh_96
(helix-turn-helix DNA binding domain)

Gilgamesh_97

Gilgamesh_98
(helix-turn-helix DNA binding domain)

Gilgamesh_99
(metalloprotease)

Gilgamesh_100
(membrane protein)

Gilgamesh_101
(membrane protein)

Gilgamesh_102

Gilgamesh_103
(ParA-like dsDNA partitioning protein)

Gilgamesh_104

Gilgamesh_105

Gilgamesh_106

Gilgamesh_107

Gilgamesh_108

Gilgamesh_109

Gilgamesh_110

Gilgamesh_111

Gilgamesh_112

Gilgamesh_113

Gilgamesh_114
(queuine tRNA-ribosyltransferase)

Gilgamesh_115

Gilgamesh_116
(PAPS reductase-like domain)

Gilgamesh_117

Gilgamesh_118

Gilgamesh_119

Gilgamesh_120

Gilgamesh_121

Gilgamesh_122

Gilgamesh_123

Gilgamesh_124

Gilgamesh_125

Gilgamesh_126

Gilgamesh_127

Gilgamesh_128

Gilgamesh_129

Gilgamesh_130

Gilgamesh_131

Gilgamesh_132

Gilgamesh_133

Gilgamesh_134

Gilgamesh_135

Gilgamesh_136

Gilgamesh_137
(DNA methylase)

Gilgamesh_138

Gilgamesh_139

Gilgamesh_140

Gilgamesh_141

Gilgamesh_142

Gilgamesh_143

Gilgamesh_144
(membrane protein)

Gilgamesh_145
(membrane protein)

Gilgamesh_146

Gilgamesh_147

Gilgamesh_148

Gilgamesh_149

Gilgamesh_150

Gilgamesh_151
(HNH endonuclease)

Gilgamesh_152

Gilgamesh_153
(membrane protein)

Gilgamesh_154

Gilgamesh_155

Gilgamesh_156

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMN234216
Refseq NumberNone yet
Archiving Info
Archiving status Not in Pitt Archives
SEA Designator Gilgamesh
SEA Lysate Titer 1.3 x 10^9
Date of SEA Lysate Titering Oct 1, 2015
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload