Gordonia phage TimTam
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Detailed Information for Phage TimTam
Discovery Information
Isolation HostGordonia terrae 3612
Found ByKrista Roszkowski
Year Found2016
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature-4°C
GPS Coordinates40.4465 N, 79.9556 W Map
Discovery NotesFound in a residential area.
Soil was soft, moist, and easy to pick up.
Soil was surrounded by a tree, green plants, and leaves.
The sun was shinning on it.
Naming NotesTim Tams are my favorite type of cookies from Australia.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedApr 25, 2016
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage576
Genome length (bp)53431
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGGCTGGGGA
GC Content66.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCZ
SubclusterCZ1
Cluster Life CycleTemperate
Other Cluster Members
Annotation StatusIn GenBank
Plaque NotesThe plaques are about 1.5 mm, cloudy and circular.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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TimTam_1
(Terminase, small subunit)

TimTam_2
(Terminase, large subunit)

TimTam_3

TimTam_4
(Portal)

TimTam_5
(Capsid maturation protease)

TimTam_6
(Major capsid protein)

TimTam_7

TimTam_8
(Head-to-tail connector complex protein)

TimTam_9
(Head-to-tail connector complex protein)

TimTam_10

TimTam_11
(Head-to-tail connector complex protein)

TimTam_12
(Major tail protein)

TimTam_13

TimTam_14
(Tail assembly chaperone)

TimTam_15
(Tail assembly chaperone)

TimTam_16

TimTam_17
(Tape measure)

TimTam_18
(Minor tail protein)

TimTam_19
(Minor tail protein)

TimTam_20
(Lysin A, protease M15 domain)

TimTam_21
(Lysin A, glycosyl hydrolase domain)

TimTam_22
(Membrane domain)

TimTam_23
(Membrane protein)

TimTam_24
(Membrane protein)

TimTam_25
(Lysin B)

TimTam_26
(Minor tail protein)

TimTam_27

TimTam_28
(Minor tail protein)

TimTam_29

TimTam_30
(Protease)

TimTam_31

TimTam_32

TimTam_33

TimTam_34
(Excise)

TimTam_35

TimTam_36

TimTam_37

TimTam_38
(DNA binding domain)

TimTam_39
(Integrase (Y-int))

TimTam_40
(HTH DNA binding protein)

TimTam_41
(Peptidase)

TimTam_42

TimTam_43

TimTam_44
(Immunity repressor)

TimTam_45

TimTam_46

TimTam_47

TimTam_48
(Antirepressor N-terminus)

TimTam_49
(Antirepressor C-terminus)

TimTam_50

TimTam_51

TimTam_52

TimTam_53

TimTam_54

TimTam_55

TimTam_56

TimTam_57

TimTam_58

TimTam_59
(Exonuclease)

TimTam_60
(RecT ssDNA binding domain)

TimTam_61

TimTam_62

TimTam_63
(Chaperonin, DnaJ-like)

TimTam_64

TimTam_65

TimTam_66
(DNA methylase)

TimTam_67
(Methyltransferase)

TimTam_68

TimTam_69

TimTam_70

TimTam_71

TimTam_72
(RepA helicase)

TimTam_73

TimTam_74

TimTam_75
(RusA resolvase)

TimTam_76

TimTam_77

TimTam_78

TimTam_79
(HTH DNA binding domain)

TimTam_80

TimTam_81

TimTam_82

TimTam_83

TimTam_84
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMH479927
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 2.0 x 10^10
Date of SEA Lysate Titering Feb 15, 2016
Pitt Freezer Box# 3
Pitt Freezer Box Grid# H5
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload