Microbacterium phage Avocadoman
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Detailed Information for Phage Avocadoman
Discovery Information
Isolation HostMicrobacterium foliorum NRRL B-24224
Found ByAndrea Miranda Duarte
Year Found2019
Location FoundFarmington, ME United States
Finding InstitutionUniversity of Maine, Farmington
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature37°C
GPS Coordinates44.668056 N, 70.148611 W Map
Discovery Notesbehind the admissions house, it was a rainy day, there were grass roots in my sample.
Naming NotesIt is named after my stuffed avocado that I take on road trips.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 21, 2020
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage349
Genome length (bp)41200
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceTCTCCCGGCA
GC Content66.4%
Fasta file available?Yes: Download fasta file
Characterization
ClusterEB
Subcluster--
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUniversity of Maine, Farmington
Annotation StatusIn GenBank
Plaque Notessmall clearings.
Has been Phamerated?Yes
Gene List

Click to View

Avocadoman_1

Avocadoman_2
(terminase small subunit)

Avocadoman_3
(terminase large subunit)

Avocadoman_4
(portal and MuF-like fusion protein)

Avocadoman_5
(capsid maturation protease)

Avocadoman_6
(major capsid protein)

Avocadoman_7

Avocadoman_8
(head-to-tail adaptor)

Avocadoman_9
(head-to-tail stopper)

Avocadoman_10

Avocadoman_11
(tail terminator)

Avocadoman_12
(major tail protein)

Avocadoman_13
(tail assembly chaperone)

Avocadoman_14
(tail assembly chaperone)

Avocadoman_15

Avocadoman_16
(tape measure protein)

Avocadoman_17
(minor tail protein)

Avocadoman_18
(minor tail protein)

Avocadoman_19

Avocadoman_20
(minor tail protein)

Avocadoman_21
(minor tail protein)

Avocadoman_22
(endolysin)

Avocadoman_23

Avocadoman_24

Avocadoman_25

Avocadoman_26

Avocadoman_27

Avocadoman_28
(exonuclease)

Avocadoman_29

Avocadoman_30

Avocadoman_31
(MazG-like nucleotide pyrophosphohydrolase)

Avocadoman_32
(thymidylate kinase)

Avocadoman_33

Avocadoman_34

Avocadoman_35
(thioredoxin)

Avocadoman_36
(holliday junction resolvase)

Avocadoman_37

Avocadoman_38

Avocadoman_39

Avocadoman_40
(DNA primase/helicase)

Avocadoman_41
(DNA polymerase I)

Avocadoman_42

Avocadoman_43

Avocadoman_44
(RNA polymerase sigma factor)

Avocadoman_45

Avocadoman_46

Avocadoman_47
(ParB-like nuclease domain protein)

Avocadoman_48

Avocadoman_49

Avocadoman_50
(HNH endonuclease)

Avocadoman_51

Avocadoman_52

Avocadoman_53

Avocadoman_54

Avocadoman_55
(dihydrofolate reductase)

Avocadoman_56

Avocadoman_57

Avocadoman_58
(thymidylate synthase)

Avocadoman_59

Avocadoman_60

Avocadoman_61

Avocadoman_62

Avocadoman_63

Avocadoman_64

Avocadoman_65

Avocadoman_66

Avocadoman_67

Avocadoman_69
(HNH endonuclease)

Avocadoman_70

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMT889372
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 103
Pitt Freezer Box Grid# G8
Available Files
GenBank File for PhameratorDownload