Detailed Information for Phage Johnathan |
Discovery Information |
Isolation Host | Microbacterium foliorum NRRL B-24224 |
Found By | Mackenzie Horutz |
Year Found | 2021 |
Location Found | WI Kenosha |
Finding Institution | Carthage College |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Yes |
Isolation Temperature | 24°C |
GPS Coordinates | 42.6201 N, 87.8218 W Map |
Discovery Notes | The soil sample was originally found by Logan Seery, and I adopted a phage from one of his initial plates because my sample did not yield any results. I was partially assisted by Jeanelle Young for the lab procedures. |
Naming Notes | In all honesty, I did not know what to name my phage. I decided to go with something random, and picked what Paul Rudd said the name of Thor's hammer in an interview once. |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Jan 26, 2022 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina |
Approximate Shotgun Coverage | 697 |
Genome length (bp) | 40971 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 10 bases |
Overhang Sequence | TCTCCCGGCA |
GC Content | 66.7% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | EB |
Subcluster | -- |
Cluster Life Cycle | Lytic |
Other Cluster Members |
|
Annotating Institution | Carthage College |
Annotation Status | In GenBank |
Plaque Notes | The plaques were of a consistent small size and were rounded in shape. |
Number of Genes | 68 |
Number of tRNAs | 3 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List |
|
Submitted Annotation in DNA Master Format | Download |
Submitted Minimal DNA Master File | Download |
Author List | Download |
Annotation Cover Sheet | Download |
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | PP405128 |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Archived |
Pitt Freezer Box# |
137 |
Pitt Freezer Box Grid# |
C12 |
Available Files |
GenBank File for Phamerator | Download |