Microbacterium phage Lahqtemish
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Detailed Information for Phage Lahqtemish
Discovery Information
Isolation HostMicrobacterium foliorum NRRL B-24224
Found ByLauryl Azure
Year Found2019
Location FoundBellingham, WA USA
Finding InstitutionNorthwest Indian College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature28°C
GPS Coordinates48.670556 N, 122.734167 W Map
Discovery NotesThe phage was isolated from sandy soil obtained from a grassy lawn. Isolating, purifying and amplifying this phage was a group project undertaken by the cell biology class at Northwest Indian College.
Naming NotesLahqtemish is a Coast Salish word that means "people of the sea"
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 2, 2020
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage691
Genome length (bp)42174
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceACTCCCGACA
GC Content66.3%
Fasta file available?Yes: Download fasta file
Characterization
ClusterEB
Subcluster--
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionNorthwest Indian College
Annotation StatusIn GenBank
Plaque NotesThis is a lytic phage that makes circular, well-defined plaques 3-10 mm in diameter.
Has been Phamerated?Yes
Gene List

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Lahqtemish_1

Lahqtemish_2
(terminase, small subunit)

Lahqtemish_3
(terminase, large subunit)

Lahqtemish_4
(portal and MuF-like fusion protein)

Lahqtemish_5
(capsid maturation protease)

Lahqtemish_6
(major capsid protein)

Lahqtemish_7

Lahqtemish_8
(head-to-tail adaptor)

Lahqtemish_9
(head-to-tail stopper)

Lahqtemish_10

Lahqtemish_11
(tail terminator)

Lahqtemish_12
(major tail protein)

Lahqtemish_13
(tail assembly chaperone)

Lahqtemish_14
(tail assembly chaperone)

Lahqtemish_15

Lahqtemish_16
(tape measure protein)

Lahqtemish_17
(minor tail protein)

Lahqtemish_18
(minor tail protein)

Lahqtemish_19

Lahqtemish_20
(minor tail protein)

Lahqtemish_21
(minor tail protein)

Lahqtemish_22
(endolysin)

Lahqtemish_23

Lahqtemish_24

Lahqtemish_25

Lahqtemish_26

Lahqtemish_27

Lahqtemish_28
(exonuclease)

Lahqtemish_29

Lahqtemish_30

Lahqtemish_31
(deoxyuridine triphosphatase)

Lahqtemish_32
(thymidylate kinase)

Lahqtemish_33

Lahqtemish_34

Lahqtemish_35
(thioredoxin)

Lahqtemish_36
(Holliday junction resolvase)

Lahqtemish_37

Lahqtemish_38

Lahqtemish_39

Lahqtemish_40

Lahqtemish_41
(DNA primase)

Lahqtemish_42
(DNA polymerase I)

Lahqtemish_43

Lahqtemish_44

Lahqtemish_45
(RNA polymerase sigma factor)

Lahqtemish_46

Lahqtemish_47

Lahqtemish_48
(ParB-like nuclease domain)

Lahqtemish_49

Lahqtemish_50

Lahqtemish_51
(HNH endonuclease)

Lahqtemish_52

Lahqtemish_53

Lahqtemish_54

Lahqtemish_55

Lahqtemish_56
(dihydrofolate reductase)

Lahqtemish_57

Lahqtemish_58

Lahqtemish_59
(thymidylate synthase)

Lahqtemish_60

Lahqtemish_61

Lahqtemish_62

Lahqtemish_63

Lahqtemish_64

Lahqtemish_65

Lahqtemish_66

Lahqtemish_67

Lahqtemish_69
(HNH endonuclease)

Lahqtemish_70

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMT889392
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 107
Pitt Freezer Box Grid# C8
Available Files
GenBank File for PhameratorDownload