Detailed Information for Phage BabyYoda |
Discovery Information |
Isolation Host | Microbacterium foliorum NRRL B-24224 |
Found By | Walter J. Holtgrefe, Cassy E. Bown |
Year Found | 2020 |
Location Found | Greenville, PA US |
Finding Institution | Thiel College |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Yes |
Isolation Temperature | 30°C |
GPS Coordinates | 41.414268 N, 80.381349 W Map |
Discovery Notes | Found in moist soil in a climate controlled greenhouse on 21 JAN 2020, nearly 3 cm deep in soil. Temperature was 22.77 degrees Celsius. Soil was collected approximately 2 cm from an octopus tree. |
Naming Notes | Baby Yoda is a character from Star Wars, who is small but mighty and the force is strong with him. Alternate naming ideas were Aviva (after a guitar one of us owns), DarthPhager (which was denied automagically), KeanuPheeves, or PhagiousnFerb. If this name is denied we will most likely use Aviva |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Mar 24, 2020 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina |
Approximate Shotgun Coverage | 12000 |
Genome length (bp) | 41557 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 10 bases |
Overhang Sequence | TCTCCCGGCA |
GC Content | 68.7% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | EB |
Subcluster | -- |
Cluster Life Cycle | Lytic |
Other Cluster Members |
|
Annotating Institution | Thiel College |
Annotation Status | In GenBank |
Morphotype | Siphoviridae |
Number of Genes | 67 |
Number of tRNAs | 2 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List |
|
Submitted Annotation in DNA Master Format | Download |
Submitted Minimal DNA Master File | Download |
Author List | Download |
Annotation Cover Sheet | Download |
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | MW601221 |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Archived |
Pitt Freezer Box# |
101 |
Pitt Freezer Box Grid# |
H4 |
Available Files |
GenBank File for Phamerator | Download |