Microbacterium phage BabyYoda
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Detailed Information for Phage BabyYoda
Discovery Information
Isolation HostMicrobacterium foliorum NRRL B-24224
Found ByWalter J. Holtgrefe, Cassy E. Bown
Year Found2020
Location FoundGreenville, PA US
Finding InstitutionThiel College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature30°C
GPS Coordinates41.414268 N, 80.381349 W Map
Discovery NotesFound in moist soil in a climate controlled greenhouse on 21 JAN 2020, nearly 3 cm deep in soil. Temperature was 22.77 degrees Celsius. Soil was collected approximately 2 cm from an octopus tree.
Naming NotesBaby Yoda is a character from Star Wars, who is small but mighty and the force is strong with him. Alternate naming ideas were Aviva (after a guitar one of us owns), DarthPhager (which was denied automagically), KeanuPheeves, or PhagiousnFerb. If this name is denied we will most likely use Aviva
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMar 24, 2020
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Approximate Shotgun Coverage12000
Genome length (bp)41557
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceTCTCCCGGCA
GC Content68.7%
Fasta file available?Yes: Download fasta file
Characterization
ClusterEB
Subcluster--
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionThiel College
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Number of Genes67
Number of tRNAs2
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

Click to View

BabyYoda_1

BabyYoda_2
(terminase small subunit)

BabyYoda_3
(terminase)

BabyYoda_4
(portal and MuF-like fusion protein)

BabyYoda_5
(capsid maturation protease)

BabyYoda_6
(major capsid protein)

BabyYoda_7

BabyYoda_8
(head-to-tail adaptor)

BabyYoda_9
(head-to-tail stopper)

BabyYoda_10

BabyYoda_11
(tail terminator)

BabyYoda_12

BabyYoda_13
(tail assembly chaperone)

BabyYoda_14
(tail assembly chaperone)

BabyYoda_15

BabyYoda_16
(tape measure protein)

BabyYoda_17
(minor tail protein)

BabyYoda_18
(minor tail protein)

BabyYoda_19

BabyYoda_20

BabyYoda_21
(endolysin)

BabyYoda_22

BabyYoda_23

BabyYoda_24

BabyYoda_25

BabyYoda_26

BabyYoda_27

BabyYoda_28
(Cas4 family exonuclease)

BabyYoda_29

BabyYoda_30

BabyYoda_31

BabyYoda_32
(HicA-like toxin)

BabyYoda_33
(deoxyuridine triphosphatase)

BabyYoda_34
(thymidylate kinase)

BabyYoda_35
(recombination directionality factor)

BabyYoda_36

BabyYoda_37
(NrdH-like glutaredoxin)

BabyYoda_38
(holliday junction resolvase)

BabyYoda_39

BabyYoda_40

BabyYoda_41

BabyYoda_42
(DNA primase/helicase)

BabyYoda_43
(DNA polymerase I)

BabyYoda_44

BabyYoda_45

BabyYoda_46
(DNA binding protein)

BabyYoda_47

BabyYoda_48

BabyYoda_49
(ParB-like nuclease domain protein)

BabyYoda_50

BabyYoda_51

BabyYoda_52
(HNH endonuclease)

BabyYoda_53

BabyYoda_54

BabyYoda_55

BabyYoda_56

BabyYoda_57
(dihydrofolate reductase)

BabyYoda_58
(thymidylate synthase)

BabyYoda_59

BabyYoda_60

BabyYoda_61

BabyYoda_62

BabyYoda_63

BabyYoda_64

BabyYoda_65

BabyYoda_66 — tRNA
(tRNA-Asn(gtt))

BabyYoda_67 — tRNA
(tRNA-Gln(ctg))

BabyYoda_68
(HNH endonuclease)

BabyYoda_69

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMW601221
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 101
Pitt Freezer Box Grid# H4
Available Files
GenBank File for PhameratorDownload