Microbacterium phage IndyLu
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Detailed Information for Phage IndyLu
Discovery Information
Isolation HostMicrobacterium foliorum NRRL B-24224
Found ByAshley Suris/Jamie Merrill/Raylon Huckabee
Year Found2020
Location FoundStephenville, TX United States
Finding InstitutionTarleton State University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation Temperature33°C
GPS Coordinates32.248 N, 98.209 W Map
Discovery NotesNear a horse barn in a dry environment
Naming NotesA combination of my two labradors' names
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 4, 2021
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1156
Genome length (bp)41958
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceACTCCCGACA
GC Content66.2%
Fasta file available?Yes: Download fasta file
Characterization
ClusterEB
Subcluster--
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionTarleton State University
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Number of Genes71
Number of tRNAs1
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

Click to View

IndyLu_1

IndyLu_2
(terminase small subunit)

IndyLu_3
(terminase large subunit)

IndyLu_4
(portal and MuF-like fusion protein)

IndyLu_5
(capsid maturation protease)

IndyLu_6
(major capsid protein)

IndyLu_7

IndyLu_8
(head-to-tail adaptor)

IndyLu_9
(head-to-tail stopper)

IndyLu_10

IndyLu_11
(tail terminator)

IndyLu_12
(major tail protein)

IndyLu_13
(tail assembly chaperone)

IndyLu_14
(tail assembly chaperone)

IndyLu_15

IndyLu_16
(tape measure protein)

IndyLu_17
(minor tail protein)

IndyLu_18
(minor tail protein)

IndyLu_19

IndyLu_20
(minor tail protein)

IndyLu_21
(minor tail protein)

IndyLu_22
(endolysin)

IndyLu_23

IndyLu_24

IndyLu_25

IndyLu_26

IndyLu_27

IndyLu_28
(Cas4 family exonuclease)

IndyLu_29

IndyLu_30

IndyLu_31
(deoxyuridine triphosphatase)

IndyLu_32
(thymidylate kinase)

IndyLu_33

IndyLu_34

IndyLu_35
(NrdH-like glutaredoxin)

IndyLu_36
(holliday junction resolvase)

IndyLu_37

IndyLu_38

IndyLu_39

IndyLu_40

IndyLu_41
(DNA primase/helicase)

IndyLu_42
(DNA polymerase I)

IndyLu_43

IndyLu_44

IndyLu_45
(DNA binding protein)

IndyLu_46

IndyLu_47
(DNA binding domain protein)

IndyLu_48

IndyLu_49
(ParB-like nuclease domain protein)

IndyLu_50

IndyLu_51

IndyLu_52
(HNH endonuclease)

IndyLu_53

IndyLu_54

IndyLu_55

IndyLu_56

IndyLu_57

IndyLu_58
(dihydrofolate reductase)

IndyLu_59

IndyLu_60

IndyLu_61
(thymidylate synthase)

IndyLu_62

IndyLu_63

IndyLu_64

IndyLu_65

IndyLu_66

IndyLu_67

IndyLu_68

IndyLu_69

IndyLu_70 — tRNA
(tRNA-Gln(ctg) detected by both Aragorn 1.2.38 and tRNAscan-SE v. 2.0, infernal score 55.3)

IndyLu_71
(HNH endonuclease)

IndyLu_72

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionOK318958
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 3.0 x 10^8
Pitt Freezer Box# 117
Pitt Freezer Box Grid# D6
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload