The Actinobacteriophage Database

Mycobacterium phage Minerva

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Detailed Information for Phage Minerva
Discovery Information
Isolation Host	Mycobacterium smegmatis mc²155
Found By	Halle Grove
Year Found	2012
Location Found	Pittsburgh, PA USA
Finding Institution	University of Pittsburgh
Program	Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?	No
Isolation Temperature	Not entered
GPS Coordinates	40.444800 N, 79.952700 W Map
Discovery Notes	Minerva was found by using direct plating.
Naming Notes	The name Minerva was inspired by a character in J.K. Rowling's series, Harry Potter.
Sequencing Information
Sequencing Complete?	Yes
Date Sequencing Completed	Jun 5, 2013
Sequencing Facility	Pittsburgh Bacteriophage Institute
Shotgun Sequencing Method	Ion Torrent
Approximate Shotgun Coverage	900
Sanger Finishing Reactions	22
Genome length (bp)	109871
Character of genome ends	3' Sticky Overhang
Overhang Length	4 bases
Overhang Sequence	ATCC
GC Content	60.7%
Fasta file available?	Yes: Download fasta file
Characterization
Cluster	J
Subcluster	--
Cluster Life Cycle	Temperate
Other Cluster Members	Click to View Ariel Bagrid BAKA Beem Bobby Bombitas Constella Courthouse Dallas DmpstrDiver Dove Duke13 Ejimix EricMillard Gonephishing Halley Hannaconda HokkenD Hughesyang JuicyJay Kalah2 KashFlow Klein LittleE Lucky2013 MiaZeal Minerva NihilNomen Odette Omega Optimus Phoebus Porcelain Pound Redno2 Schatzie Squint Superphikiman Thibault ThreeRngTarjay Wanda Yeet Zelink
Annotating Institution	Unknown or unassigned
Annotation Status	In GenBank
Morphotype	Siphoviridae
Number of Genes	238
Number of tRNAs	1
Number of tmRNAs	0
Has been Phamerated?	Yes
Gene List	Click to View Minerva_1 (HNH endonuclease) Minerva_2 (terminase) Minerva_3 Minerva_4 Minerva_5 Minerva_6 Minerva_7 Minerva_8 Minerva_9 (terminase large subunit) Minerva_10 Minerva_11 (portal protein) Minerva_12 (capsid maturation protease) Minerva_13 (major capsid protein) Minerva_14 (glycosyltransferase) Minerva_15 (serine/threonine kinase) Minerva_16 (methyltransferase) Minerva_17 (glycosyltransferase) Minerva_18 (glycosyltransferase) Minerva_19 (glycosyltransferase) Minerva_20 (peptidase) Minerva_21 (UDP-glucose dehydrogenase) Minerva_22 Minerva_23 Minerva_24 Minerva_25 (head-to-tail adaptor) Minerva_26 (head-to-tail stopper) Minerva_27 Minerva_28 (tail terminator) Minerva_29 Minerva_30 Minerva_31 (major tail protein) Minerva_32 (tail assembly chaperone) Minerva_33 (tail assembly chaperone) Minerva_34 (tape measure protein) Minerva_35 (endonuclease VII) Minerva_36 (minor tail protein) Minerva_37 (minor tail protein) Minerva_38 (minor tail protein) Minerva_39 (minor tail protein) Minerva_40 (minor tail protein) Minerva_41 (minor tail protein) Minerva_42 (minor tail protein) Minerva_43 Minerva_44 (minor tail protein) Minerva_45 (minor tail protein) Minerva_46 Minerva_47 Minerva_48 Minerva_49 Minerva_50 Minerva_51 Minerva_52 (HNH endonuclease) Minerva_53 (lysin A) Minerva_54 Minerva_55 (lysin B) Minerva_56 (holin) Minerva_57 Minerva_58 (thioredoxin) Minerva_59 Minerva_60 Minerva_61 Minerva_62 Minerva_63 Minerva_64 Minerva_65 (Lsr2-like DNA bridging protein) Minerva_66 Minerva_67 Minerva_68 Minerva_69 Minerva_70 Minerva_71 Minerva_72 Minerva_73 Minerva_74 Minerva_75 Minerva_76 Minerva_77 Minerva_78 Minerva_79 Minerva_80 Minerva_81 Minerva_82 Minerva_83 Minerva_84 (tyrosine integrase) Minerva_85 Minerva_86 (endonuclease VII) Minerva_87 Minerva_88 Minerva_89 Minerva_90 Minerva_91 Minerva_92 Minerva_93 Minerva_94 Minerva_95 Minerva_96 Minerva_97 Minerva_98 Minerva_99 Minerva_100 (esterase) Minerva_101 Minerva_102 Minerva_103 Minerva_104 Minerva_105 Minerva_106 (HNH endonuclease) Minerva_107 Minerva_108 Minerva_109 Minerva_110 Minerva_111 Minerva_112 Minerva_113 Minerva_114 Minerva_115 (RecB-like exonuclease) Minerva_116 Minerva_117 Minerva_118 Minerva_119 (DNA methyltransferase) Minerva_120 (HNH endonuclease) Minerva_121 Minerva_122 Minerva_123 Minerva_124 Minerva_125 Minerva_126 (polynucleotide kinase) Minerva_127 Minerva_128 Minerva_129 (endonuclease VII) Minerva_130 (WhiB family transcription factor) Minerva_131 (helix-turn-helix DNA binding protein) Minerva_132 Minerva_133 Minerva_134 Minerva_135 Minerva_136 (DNA primase/polymerase) Minerva_137 (HNH endonuclease) Minerva_138 Minerva_139 Minerva_140 Minerva_141 Minerva_142 Minerva_143 Minerva_144 (helix-turn-helix DNA binding protein) Minerva_145 Minerva_146 Minerva_147 (helix-turn-helix DNA binding protein) Minerva_148 (HNH endonuclease) Minerva_149 Minerva_150 Minerva_151 Minerva_152 Minerva_153 (HNH endonuclease) Minerva_154 Minerva_155 Minerva_156 (RNA ligase) Minerva_157 (ClpP-like protease) Minerva_158 (DnaQ-like DNA polymerase III subunit) Minerva_159 Minerva_160 Minerva_161 Minerva_162 (HNH endonuclease) Minerva_163 Minerva_164 (nucleotide pyrophosphohydrolase) Minerva_165 Minerva_166 Minerva_167 (helix-turn-helix DNA binding protein) Minerva_168 Minerva_169 Minerva_170 Minerva_171 Minerva_172 Minerva_173 Minerva_174 Minerva_175 (metallophosphoesterase) Minerva_176 Minerva_177 Minerva_178 Minerva_179 Minerva_180 Minerva_181 Minerva_182 Minerva_183 Minerva_184 — tRNA (tRNA-Gly(tcc)) Minerva_185 Minerva_186 Minerva_187 (histidine triad nucleotide binding protein) Minerva_188 Minerva_189 Minerva_190 Minerva_191 Minerva_192 Minerva_193 Minerva_194 Minerva_195 Minerva_196 Minerva_197 Minerva_198 Minerva_199 (FtsK-like DNA translocase) Minerva_200 Minerva_201 Minerva_202 (Ku-like dsDNA break-binding protein) Minerva_203 Minerva_204 Minerva_205 Minerva_206 Minerva_207 Minerva_208 Minerva_209 Minerva_210 Minerva_211 Minerva_212 Minerva_213 Minerva_214 Minerva_215 Minerva_216 Minerva_217 Minerva_218 Minerva_219 Minerva_220 Minerva_221 Minerva_222 Minerva_223 Minerva_224 Minerva_225 Minerva_226 Minerva_227 Minerva_228 Minerva_229 Minerva_230 Minerva_231 Minerva_232 Minerva_233 Minerva_234 Minerva_235 Minerva_236 Minerva_237 Minerva_238 Minerva_239
Publication Info
Uploaded to GenBank?	Yes
GenBank Accession	KM101123
Refseq Number	NC_026584
Published in Paper	Pope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status	Archived
Pitt Freezer Box#	96
Pitt Freezer Box Grid#	F5
Available Files
Plaque Picture	Download
Restriction Digest Picture	Download
EM Picture	Download

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