Microbacterium phage Namago
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Detailed Information for Phage Namago
Discovery Information
Isolation HostMicrobacterium foliorum NRRL B-24224
Found BySarah Vetsch and Sam Sampinos
Year Found2017
Location FoundSpokane, WA USA
Finding InstitutionGonzaga University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature22°C
GPS Coordinates47.66652 N, 117.399915 W Map
Discovery NotesSample of enriched soil from between Foley Library and Mulligan Field on Gonzaga University's Campus
Naming NotesNamago is a play off the Buddhist word Namaste
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 29, 2020
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Sequencer UsedIllumina MiSeq
Read TypeSingle-end reads
Read Length150 bp
Approximate Shotgun Coverage643
Genome length (bp)61793
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length199 bp
GC Content66.9%
Fasta file available?Yes: Download fasta file
Characterization
ClusterEG
Subcluster--
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionGonzaga University
Annotation StatusIn GenBank
Plaque Notesvery small clear spots between 0.2-0.3 of a cm
Number of Genes108
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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Namago_1

Namago_2

Namago_3

Namago_4

Namago_5

Namago_6

Namago_7

Namago_8

Namago_9

Namago_10
(DprA-like DNA processing chain A)

Namago_11

Namago_12

Namago_13
(helix-turn-helix DNA-binding domain protein)

Namago_14
(helix-turn-helix DNA-binding domain protein)

Namago_15
(ribbon-helix-helix DNA binding domain protein)

Namago_16
(helix-turn-helix DNA-binding domain protein)

Namago_17

Namago_18

Namago_19
(ribbon-helix-helix DNA binding domain protein)

Namago_20
(terminase)

Namago_21

Namago_22
(portal protein)

Namago_23
(capsid maturation protease and MuF-like fusion protein)

Namago_24

Namago_25
(major capsid hexamer protein)

Namago_26

Namago_27

Namago_28
(major tail protein)

Namago_29

Namago_30
(phosphoesterase)

Namago_31
(head-to-tail adaptor)

Namago_32

Namago_33

Namago_34
(tail assembly chaperone)

Namago_35
(tail assembly chaperone)

Namago_36
(tape measure protein)

Namago_37
(minor tail protein)

Namago_38
(minor tail protein)

Namago_39
(minor tail protein)

Namago_40

Namago_41

Namago_42

Namago_43

Namago_44

Namago_45
(endolysin)

Namago_46

Namago_47

Namago_48
(DnaJ-like chaperonin)

Namago_49

Namago_50
(Cas4 family exonuclease)

Namago_51
(RecA-like DNA recombinase)

Namago_52
(HNH endonuclease)

Namago_53

Namago_54
(RuvC-like resolvase)

Namago_55

Namago_56

Namago_57
(MazG-like nucleotide pyrophosphohydrolase)

Namago_58
(ssDNA binding protein)

Namago_59

Namago_60

Namago_61

Namago_62

Namago_63

Namago_64

Namago_65

Namago_66

Namago_67

Namago_68

Namago_69

Namago_70
(DNA primase/helicase)

Namago_71

Namago_72
(ribbon-helix-helix DNA binding domain protein)

Namago_73

Namago_74

Namago_75

Namago_76

Namago_77

Namago_78

Namago_79

Namago_80

Namago_81

Namago_82

Namago_83

Namago_84

Namago_85

Namago_86

Namago_87

Namago_88

Namago_89

Namago_90

Namago_91

Namago_92

Namago_93

Namago_94

Namago_95

Namago_96

Namago_97

Namago_98

Namago_99

Namago_100

Namago_101

Namago_102

Namago_103

Namago_104

Namago_105

Namago_106

Namago_107

Namago_108

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMW365949
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 65
Pitt Freezer Box Grid# B6
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload