Microbacterium phage Phabia
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Detailed Information for Phage Phabia
Discovery Information
Isolation HostMicrobacterium foliorum NRRL B-24224
Found ByAlli Lombardo and Jacky Marr
Year Found2019
Location FoundSpokane, WA USA
Finding InstitutionGonzaga University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature22°C
GPS Coordinates47.6673 N, 117.4024 W Map
Naming NotesPhabia was originally meant to be named Phabio, but the name was already taken. We decided to spell it's name with a "Ph" to include the idea that it is in fact a phage. The name does not have any scientific thought behind it, it was simply just a name that both of the founders agreed upon.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedAug 7, 2020
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage5506
Genome length (bp)61802
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length199 bp
GC Content66.9%
Fasta file available?Yes: Download fasta file
Characterization
ClusterEG
Subcluster--
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionGonzaga University
Annotation StatusIn GenBank
Plaque NotesThe plaque clearings appeared circular and clear at the center, with slightly cloudy edges. The plaques were all relative in size at about 1 mm.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Phabia_1

Phabia_2

Phabia_3

Phabia_4

Phabia_5

Phabia_6

Phabia_7

Phabia_8
(histidine triad nucleotide binding protein)

Phabia_9

Phabia_10
(DprA-like DNA processing chain A)

Phabia_11

Phabia_12

Phabia_13
(helix-turn-helix DNA binding domain protein)

Phabia_14
(helix-turn-helix DNA binding domain protein)

Phabia_15
(ribbon-helix-helix DNA binding domain protein)

Phabia_16
(helix-turn-helix DNA binding domain protein)

Phabia_17

Phabia_18

Phabia_19
(ribbon-helix-helix DNA binding domain protein)

Phabia_20
(terminase)

Phabia_21

Phabia_22
(portal protein)

Phabia_23
(capsid maturation protease and MuF-like fusion protein)

Phabia_24

Phabia_25
(major capsid protein)

Phabia_26

Phabia_27

Phabia_28
(major tail protein)

Phabia_29

Phabia_30
(phosphoesterase)

Phabia_31
(head-to-tail adaptor)

Phabia_32

Phabia_33

Phabia_34
(tail assembly chaperone)

Phabia_35
(tail assembly chaperone)

Phabia_36
(tape measure protein)

Phabia_37
(minor tail protein)

Phabia_38
(minor tail protein)

Phabia_39
(minor tail protein)

Phabia_40

Phabia_41

Phabia_42

Phabia_43

Phabia_44

Phabia_45
(endolysin)

Phabia_46

Phabia_47

Phabia_48
(DnaJ-like chaperonin)

Phabia_49

Phabia_50
(Cas4 family exonuclease)

Phabia_51
(RecA-like DNA recombinase)

Phabia_52
(HNH endonuclease)

Phabia_53
(RuvC-like resolvase)

Phabia_54

Phabia_55

Phabia_56
(MazG-like nucleotide pyrophosphohydrolase)

Phabia_57
(ssDNA binding protein)

Phabia_58

Phabia_59

Phabia_60

Phabia_61

Phabia_62

Phabia_63

Phabia_64

Phabia_65

Phabia_66

Phabia_67

Phabia_68

Phabia_69
(DNA primase/helicase)

Phabia_70

Phabia_71
(ribbon-helix-helix DNA binding domain protein)

Phabia_72

Phabia_73

Phabia_74

Phabia_75

Phabia_76

Phabia_77

Phabia_78

Phabia_79

Phabia_80

Phabia_81

Phabia_82

Phabia_83

Phabia_84

Phabia_85

Phabia_86

Phabia_87

Phabia_88

Phabia_89

Phabia_90

Phabia_91

Phabia_92

Phabia_93

Phabia_94

Phabia_95

Phabia_96

Phabia_97

Phabia_98

Phabia_99

Phabia_100

Phabia_101

Phabia_102

Phabia_103

Phabia_104

Phabia_105

Phabia_106

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMW365950
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 112
Pitt Freezer Box Grid# G3
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload