Microbacterium phage Phinky
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Detailed Information for Phage Phinky
Discovery Information
Isolation HostMicrobacterium foliorum NRRL B-24224
Found ByAnalise Griffiths and Muskan Singh
Year Found2019
Location FoundThorndale, PA United States
Finding InstitutionUniversity of the Sciences in Philadelphia
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature31°C
GPS Coordinates39.9929 N, 75.7452 W Map
Discovery NotesSoil was taken on 8/23/19 from a Suburban area with little to no foot traffic. The soil was collected next to a grove of pine trees by a house with no slope. Moist soil 3 cm deep about a day after the last rain.
Naming NotesWe have the people asking...
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 20, 2020
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage102
Genome length (bp)63064
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length195 bp
GC Content67.4%
Fasta file available?Yes: Download fasta file
Characterization
ClusterEG
Subcluster--
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUniversity of the Sciences in Philadelphia
Annotation StatusIn GenBank
Plaque NotesSmall, 0.5 mm, slight shading ring around the plaques
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

Phinky_1

Phinky_2

Phinky_3

Phinky_4

Phinky_5

Phinky_6

Phinky_7

Phinky_8

Phinky_9

Phinky_10

Phinky_11

Phinky_12
(histidine triad nucleotide binding protein)

Phinky_13

Phinky_14
(DprA-like DNA processing chain A)

Phinky_15

Phinky_16

Phinky_17
(helix-turn-helix DNA binding domain)

Phinky_18
(helix-turn-helix DNA binding domain)

Phinky_19

Phinky_20
(ribbon-helix-helix DNA binding domain)

Phinky_21

Phinky_22

Phinky_23

Phinky_24

Phinky_25
(ribbon-helix-helix DNA binding domain)

Phinky_26
(terminase)

Phinky_27

Phinky_28
(portal protein)

Phinky_29
(capsid maturation protease and MuF-like fusion protein)

Phinky_30

Phinky_31
(major capsid protein)

Phinky_32

Phinky_33

Phinky_34
(major tail protein)

Phinky_35

Phinky_36

Phinky_37
(head-to-tail adaptor)

Phinky_38

Phinky_39

Phinky_40
(tail assembly chaperone)

Phinky_41
(tail assembly chaperone)

Phinky_42
(tape measure protein)

Phinky_43
(minor tail protein)

Phinky_44
(minor tail protein)

Phinky_45
(minor tail protein)

Phinky_46

Phinky_47

Phinky_48

Phinky_49

Phinky_50

Phinky_51

Phinky_52
(lysin A)

Phinky_53

Phinky_54

Phinky_55

Phinky_56

Phinky_57
(MazG-like nucleotide pyrophosphohydrolase)

Phinky_58
(Cas4 family exonuclease)

Phinky_59
(ssDNA binding protein)

Phinky_60
(HNH endonuclease)

Phinky_61

Phinky_62
(RuvC-like resolvase)

Phinky_63

Phinky_64

Phinky_66
(ssDNA binding protein)

Phinky_67

Phinky_68

Phinky_69

Phinky_70

Phinky_71

Phinky_72

Phinky_73

Phinky_74

Phinky_75

Phinky_76

Phinky_77

Phinky_78

Phinky_79
(helix-turn-helix DNA binding domain)

Phinky_80
(DNA primase/helicase)

Phinky_81

Phinky_82

Phinky_83

Phinky_84

Phinky_85

Phinky_86

Phinky_87

Phinky_88

Phinky_89

Phinky_90

Phinky_91

Phinky_92

Phinky_93

Phinky_94

Phinky_95

Phinky_96

Phinky_97

Phinky_98

Phinky_99

Phinky_100

Phinky_101

Phinky_102

Phinky_103

Phinky_104

Phinky_105

Phinky_106

Phinky_107

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMT639641
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 5.32*10^9
Pitt Freezer Box# 98
Pitt Freezer Box Grid# D5
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload