Microbacterium phage Squash
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Detailed Information for Phage Squash
Discovery Information
Isolation HostMicrobacterium foliorum NRRL B-24224
Found ByAnn-Catherine Stanton
Year Found2016
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramPhage Hunters Integrating Research and Education
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates40.4342 N, 79.9614 W Map
Discovery NotesFound in hard, gray-brown clumps of dirt found by the sidewalk, beneath a small tree
Naming NotesIt's host, M. foliorum, is yellow, like a squash
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMar 8, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1052
Genome length (bp)62312
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length204 bp
GC Content66.8%
Fasta file available?Yes: Download fasta file
Characterization
ClusterEG
Subcluster--
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Plaque NotesPlaques have multiple morphologies, ranging from 0.25mm in diameter to 1mm in diameter. Plaques are clear.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Squash_1

Squash_2

Squash_3

Squash_4

Squash_5

Squash_6

Squash_7

Squash_8

Squash_9

Squash_10

Squash_11

Squash_12
(ssDNA binding protein)

Squash_13

Squash_14

Squash_15
(helix-turn-helix DNA binding protein)

Squash_16
(helix-turn-helix DNA binding protein)

Squash_17
(DNA binding domain protein)

Squash_18
(ribbon-helix-helix DNA binding domain protein)

Squash_19

Squash_20

Squash_21
(DNA binding protein)

Squash_22
(terminase)

Squash_23

Squash_24
(portal protein)

Squash_25
(capsid morphogenesis protein)

Squash_26

Squash_27
(major capsid protein)

Squash_28

Squash_29

Squash_30
(major tail protein)

Squash_31

Squash_32
(phosphoesterase)

Squash_33
(head-to-tail adaptor)

Squash_34

Squash_35

Squash_36
(tail assembly chaperone)

Squash_37
(tail assembly chaperone)

Squash_38
(tape measure protein)

Squash_39
(minor tail protein)

Squash_40
(minor tail protein)

Squash_41
(minor tail protein)

Squash_42

Squash_43

Squash_44

Squash_45

Squash_46

Squash_47

Squash_48
(lysin A)

Squash_49

Squash_50

Squash_51

Squash_52

Squash_53

Squash_54
(DNA recombinase)

Squash_55
(HNH endonuclease)

Squash_56
(RuvC-like resolvase)

Squash_57

Squash_58

Squash_59

Squash_60
(endonuclease VII)

Squash_61
(nucleotide pyrophosphohydrolase)

Squash_62
(ssDNA binding protein)

Squash_63

Squash_64

Squash_65

Squash_66

Squash_67

Squash_68

Squash_69

Squash_70

Squash_71

Squash_72
(DNA primase)

Squash_73

Squash_74

Squash_75

Squash_76

Squash_77

Squash_78

Squash_79

Squash_80
(nucleotide pyrophosphohydrolase)

Squash_81

Squash_82

Squash_83

Squash_84

Squash_85

Squash_86

Squash_87

Squash_88

Squash_89

Squash_90

Squash_91

Squash_92

Squash_93

Squash_94

Squash_95

Squash_96

Squash_97

Squash_98

Squash_99

Squash_100

Squash_101

Squash_102

Squash_103

Squash_104

Squash_105

Squash_106

Squash_107

Squash_108

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMH153813
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 5
Pitt Freezer Box Grid# B10
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload