| Detailed Information for Phage Root | |
| Discovery Information | |
| Isolation Host | Curtobacterium flaccumfaciens NRRL B-59340 |
| Found By | Theresa Chiu |
| Year Found | 2024 |
| Location Found | Pittsburgh, PA |
| Finding Institution | University of Pittsburgh |
| Program | Phage Hunters Integrating Research and Education |
| From enriched soil sample? | No |
| Isolation Temperature | 30°C |
| GPS Coordinates | 40.441695 N, 79.946033 W Map |
| Discovery Notes | Found under the fourth tree following the path on the left at Schenley Park. |
| Naming Notes | One of my nicknames from when I was younger. Partly inspired by Root from Person of Interest! Annotated by T. Chiu. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Aug 14, 2024 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Approximate Shotgun Coverage | 12849 |
| Genome length (bp) | 15138 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 11 bases |
| Overhang Sequence | CCCGCGCCAGC |
| GC Content | 69.1% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | Singleton |
| Subcluster | -- |
| Cluster Life Cycle | Unknown |
| Other Cluster Members |
Click to ViewArV2 Attoomi Ball Barebow Cantare ChewyVIII Chymera CyranoPS DillyDally DocB7 DrWorm DS6A E3 Elener EmiRose Eyre Finch Finkle Footloose FuzzBuster GAL1 Gilgamesh GMA1 GMA4 Gudmit Ibantik IdentityCrisis Jace JeanGrey Juicebox Kithara Kromp Kumao LilSpotty LuckyBarnes Lukepolites Magritte Min1 MooMoo mu16 OnionKnight P3MA PensacolaC28 phiAsp2 phiSAV Phroglets Pine5 Ponzi PSonyx pZL12 REQ2 REQ3 Reynauld RomansRevenge Root RRH1 Samy Shambre1 Shocker Shrew Sleepyhead Spartoi StAugustine Sunfish TinyDot TJE1 Tonitrus TPA2 TPA4 Trogglehumper TurkishDelight ValentiniPuff VanLee Whack Wollypog Yappy |
| Annotating Institution | University of Pittsburgh |
| Annotation Status | In GenBank |
| Plaque Notes | Satellite plaques of varying sizes. |
| Number of Genes | 23 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewRoot_1 Root_2 Root_3 Root_4 Root_5 Root_6 Root_7 Root_8 Root_9 Root_10 Root_11 Root_12 Root_13 Root_14 Root_15 Root_16 Root_17 Root_18 Root_19 Root_20 Root_21 Root_22 Root_23 |
| Submitted Minimal DNA Master File | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | PQ868947 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Not in Pitt Archives |
| SEA Lysate Titer | 1.3*10^10 |
| Available Files | |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| Virtual Digest Picture | Download |
| GenBank File for Phamerator | Download |
