| Detailed Information for Phage Superphikiman |
| Discovery Information |
| Isolation Host | Mycobacterium smegmatis mc²155 |
| Found By | Pratik Pradhan |
| Year Found | 2015 |
| Location Found | Philadelphia, PA USA |
| Finding Institution | Drexel University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | No |
| Isolation Temperature | Not entered |
| GPS Coordinates | 39.955 N, 75.187667 W Map |
| Discovery Notes | Time: 5:06 PM
Depth: 3 inches
Temperature: 72 degrees
Found outside of Lebow Hall on Drexel University Campus |
| Naming Notes | The name came from my elementary school email "supertikiman", and instead I changed it to superphikiman. |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Mar 24, 2016 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina MiSeq |
| Read Type | Single-end reads |
| Read Length | 150 bp |
| Approximate Shotgun Coverage | 335 |
| Genome length (bp) | 109799 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 4 bases |
| Overhang Sequence | ATCC |
| GC Content | 61.0% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | J |
| Subcluster | -- |
| Cluster Life Cycle | Temperate |
| Other Cluster Members |
|
| Annotating Institution | Unknown or unassigned |
| Annotation Status | In GenBank |
| Plaque Notes | I hate circular, clear, 1 mm plaques and they were very aggressive in their growth. |
| Morphotype | Siphoviridae |
| Number of Genes | 239 |
| Number of tRNAs | 1 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MF919534 |
| Refseq Number | None yet |
| Published in Paper | Pradhan P et al 2018, Genome Announcements: Complete Genome Sequence of Cluster J Mycobacteriophage Superphikiman |
| Archiving Info |
| Archiving status |
Archived |
| Pitt Freezer Box# |
25 |
| Pitt Freezer Box Grid# |
H1 |
| Available Files |
| Restriction Digest Picture | Download |
| Final DNAMaster File | Download |
| GenBank File for Phamerator | Download |
