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Detailed Information for Phage P105
Discovery Information
Isolation HostPropionibacterium acnes ATCC 29399
Found ByUnavailable
Year Found2010
Location FoundUnavailable
Finding InstitutionUniversity of California, Los Angeles
ProgramUnavailable
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS CoordinatesUnavailable
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedSep 25, 2012
Sequencing FacilityUC Davis Genome Center
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage30000
Genome length (bp)29202
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceTCGTACGGCTT
GC Content54.2%
Fasta file available?Yes: Download fasta file
Characterization
ClusterBU
Subcluster--
Other Cluster Members
MorphotypeSiphoviridae
Final annotation complete?No
Has been Phamerated?Yes
Gene List

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P105_1
(Original GeneMark call @bp 2; Glimmer calls start at 20)

P105_2
(Original GeneMark call @bp 373)

P105_3
(Original GeneMark call @bp 1881)

P105_4
(Original GeneMark call @bp 3210)

P105_5
(Original GeneMark call @bp 4069)

P105_6
(Original GeneMark call @bp 4630; Glimmer calls start at 4627)

P105_7
(Original GeneMark call @bp 5625; Glimmer calls start at 5607)

P105_8
(Original GeneMark call @bp 6088)

P105_9
(Original GeneMark call @bp 6442)

P105_10
(Original GeneMark call @bp 6729)

P105_11
(Original GeneMark call @bp 7140)

P105_13
(Original GeneMark call @bp 8205; Glimmer calls start at 8319)

P105_12
(Original GeneMark call @bp 7810 ** not called by Glimmer)

P105_14
(Original GeneMark call @bp 8500)

P105_15
(Original GeneMark call @bp 11256; Glimmer calls start at 11205)

P105_16
(Original GeneMark call @bp 12154)

P105_17
(Original GeneMark call @bp 13332)

P105_18
(Original GeneMark call @bp 14232; Glimmer calls start at 14208)

P105_19
(Original GeneMark call @bp 14475)

P105_20
(Original GeneMark call @bp 15603; Glimmer calls start at 15351)

P105_21
(Original GeneMark call @bp 16227; Glimmer calls start at 16278)

P105_22
(Original GeneMark call @bp 17224)

P105_23
(Original GeneMark call @bp 17622)

P105_24
(Original GeneMark call @bp 17901)

P105_25
(Original GeneMark call @bp 18236)

P105_26
(Original GeneMark call @bp 19290)

P105_27
(Original GeneMark call @bp 19481)

P105_28
(Original Glimmer call @bp 19677 has strength 8.99; This gene is truncated in this phage relative to others)

P105_29
(Original GeneMark call @bp 20289)

P105_30
(Original GeneMark call @bp 21007)

P105_31
(This gene wasn t called here, but is annotated in P14.4 and PA6, and sequence is conserved.)

P105_32
(Original Glimmer call @bp 21360 has strength 5.87)

P105_33
(Original GeneMark call @bp 22424)

P105_34
(Original GeneMark call @bp 22941)

P105_35
(Original GeneMark call @bp 23399)

P105_36
(Original GeneMark call @bp 24343)

P105_37
(Original GeneMark call @bp 24696)

P105_38
(This small gene was not called here, but is called in all others and the sequence is conserved.)

P105_39
(Original GeneMark call @bp 25005)

P105_40
(Original GeneMark call @bp 25229)

P105_41
(Original GeneMark call @bp 25785)

P105_42
(Original GeneMark call @bp 26217)

P105_43
(Original GeneMark call @bp 26617)

P105_44

P105_45
(Original Glimmer call @bp 28835 has strength 10.18)

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionJX262219
Refseq NumberNC_018849