Microbacterium phage Kyva
Know something about this phage that we don't? Modify its data.
Detailed Information for Phage Kyva
Discovery Information
Isolation HostMicrobacterium foliorum NRRL B-24224
Found ByEva Ulrichsen, Kaia Seno
Year Found2022
Location FoundSpokane, WA USA
Finding InstitutionGonzaga University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature22°C
GPS Coordinates47.6678 N, 117.40285 W Map
Discovery NotesThe phage sample was collected at the base of a tree, consisting of damp soil and blades of grass. An enriched soil sample.
Naming NotesA combination of both partners' first name.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedSep 6, 2023
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Sequencer UsedIllumina MiSeq
Read TypeSingle-end reads
Read Length150 bp
Approximate Shotgun Coverage45
Genome length (bp)62919
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length199 bp
GC Content66.9%
Fasta file available?Yes: Download fasta file
Characterization
ClusterEG
Subcluster--
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionGonzaga University
Annotation StatusIn GenBank
Plaque NotesThe phage formed 1-4.5mm diameter plaques, while the edge of the plaques were lighter than the surrounding bacterial lawn.
MorphotypePodoviridae
Number of Genes112
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

Click to View

Kyva_1

Kyva_2

Kyva_3

Kyva_4

Kyva_5

Kyva_6

Kyva_7

Kyva_8

Kyva_9

Kyva_10

Kyva_11

Kyva_12
(DprA-like ssDNA binding protein)

Kyva_13

Kyva_14

Kyva_15
(helix-turn-helix DNA binding domain)

Kyva_16
(helix-turn-helix DNA binding domain)

Kyva_17
(ribbon-helix-helix DNA binding domain)

Kyva_18
(helix-turn-helix DNA binding domain)

Kyva_19

Kyva_20

Kyva_21
(ribbon-helix-helix DNA binding domain)

Kyva_22
(terminase)

Kyva_23

Kyva_24
(portal protein)

Kyva_25
(capsid maturation protease)

Kyva_26

Kyva_27
(major capsid hexamer protein)

Kyva_28

Kyva_29

Kyva_30
(major tail protein)

Kyva_31

Kyva_32
(phosphoesterase)

Kyva_33
(head-to-tail adaptor)

Kyva_34

Kyva_35

Kyva_36
(tail assembly chaperone)

Kyva_37
(tail assembly chaperone)

Kyva_38
(tape measure protein)

Kyva_39
(minor tail protein)

Kyva_40
(minor tail protein)

Kyva_41
(minor tail protein)

Kyva_42

Kyva_43

Kyva_44

Kyva_45

Kyva_46

Kyva_47
(endolysin)

Kyva_48

Kyva_49

Kyva_50
(chaperonin, DnaJ-like)

Kyva_51

Kyva_52
(Cas4 family exonuclease)

Kyva_53
(RAD52-like single-strand annealing protein)

Kyva_54
(HNH endonuclease)

Kyva_55

Kyva_56
(RuvC-like resolvase)

Kyva_57

Kyva_58
(cyclic nucleotide sequestering protein)

Kyva_59
(MazG-like nucleotide pyrophosphohydrolase)

Kyva_60
(SSB protein)

Kyva_61

Kyva_62

Kyva_63

Kyva_64

Kyva_65

Kyva_66

Kyva_67

Kyva_68

Kyva_69

Kyva_70

Kyva_71

Kyva_72

Kyva_73
(DNA primase/helicase)

Kyva_74

Kyva_75
(ribbon-helix-helix DNA binding domain)

Kyva_76

Kyva_77

Kyva_78

Kyva_79

Kyva_80

Kyva_81

Kyva_82

Kyva_83

Kyva_84

Kyva_85

Kyva_86

Kyva_87

Kyva_88

Kyva_89

Kyva_90

Kyva_91

Kyva_92

Kyva_93

Kyva_94

Kyva_95

Kyva_96

Kyva_97

Kyva_98

Kyva_99

Kyva_100

Kyva_101

Kyva_102

Kyva_103

Kyva_104

Kyva_105

Kyva_106

Kyva_107

Kyva_108

Kyva_109

Kyva_110

Kyva_111

Kyva_112

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionPX307276
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 165
Pitt Freezer Box Grid# B6
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload