| Detailed Information for Phage Shayna | |
| Discovery Information | |
| Isolation Host | Curtobacterium flaccumfaciens NRRL B-729 SEA |
| Found By | Serena Slatas |
| Year Found | 2024 |
| Location Found | Pittsburgh, PA USA |
| Finding Institution | University of Pittsburgh |
| Program | Phage Hunters Integrating Research and Education |
| From enriched soil sample? | Yes |
| Isolation Temperature | 30°C |
| GPS Coordinates | 40.44153 N, 79.95508 W Map |
| Discovery Notes | This phage was found outside of Posvar Hall. It was collected on 3/19/2024. The plaque picture was taken after 48 hours of incubation. Annotated by Serena Slatas and Sophie Sliter-Hays. |
| Naming Notes | This phage is named after my dog. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jun 4, 2024 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Approximate Shotgun Coverage | 10088 |
| Genome length (bp) | 41333 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 10 bases |
| Overhang Sequence | ACTCCCGGCA |
| GC Content | 65.7% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | EB |
| Subcluster | -- |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
Click to ViewAbigail Albedo Albright AnnaLie Armstrong Arroyo AvGardian Avocadoman BabyDaisy BabyYoda Bachaco BAjuniper BelmontSKP Bernstein Brahms BubbaBear Buldak Burritobowl Cashington Celaena ChiliPepper Clayda5 CliffHanger Coltrane CroZenni DickRichards Didgeridoo DirtyBubble Dismas Doobus Eden Elva Eula Finalfrontier FlameThrower Franklin22 Gack Icarian IndyLu Johnathan Jovita Kate33 Katzastrophic Kenzers Kieran Lahqtemish LimaBean Loviatar Lynlen Nicky22 Olliecat Phisb QMacho Quenya Rollins Rona SanaSana SansAfet SarBear Sharkboy Shayna Skylord Slay Squircle Stoor Stromboli SunnyD Swervy Teagster TukTuk Vitas WalkingDead |
| Annotating Institution | University of Pittsburgh |
| Annotation Status | Overdue (Expected completion by 12/4/2024) |
| Morphotype | Siphoviridae |
| Number of Genes | 75 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewShayna_1 Shayna_2 Shayna_3 Shayna_4 Shayna_5 Shayna_6 Shayna_7 Shayna_8 Shayna_9 Shayna_10 Shayna_11 Shayna_12 Shayna_13 Shayna_14 Shayna_15 Shayna_16 Shayna_17 Shayna_18 Shayna_19 Shayna_20 Shayna_21 Shayna_22 Shayna_23 Shayna_24 Shayna_25 Shayna_26 Shayna_27 Shayna_28 Shayna_29 Shayna_30 Shayna_31 Shayna_32 Shayna_33 Shayna_34 Shayna_35 Shayna_36 Shayna_37 Shayna_38 Shayna_39 Shayna_40 Shayna_41 Shayna_42 Shayna_43 Shayna_44 Shayna_45 Shayna_46 Shayna_47 Shayna_48 Shayna_49 Shayna_50 Shayna_51 Shayna_52 Shayna_53 Shayna_54 Shayna_55 Shayna_56 Shayna_57 Shayna_58 Shayna_59 Shayna_60 Shayna_61 Shayna_62 Shayna_63 Shayna_64 Shayna_65 Shayna_66 Shayna_67 Shayna_68 Shayna_69 Shayna_70 Shayna_71 Shayna_72 Shayna_73 Shayna_74 Shayna_75 |
| Publication Info | |
| Uploaded to GenBank? | No |
| GenBank Accession | None yet |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Not in Pitt Archives |
| Available Files | |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |