Curtobacterium phage Squircle
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Detailed Information for Phage Squircle | |
Discovery Information | |
Isolation Host | Curtobacterium flaccumfaciens NRRL B-729 SEA |
Found By | Noelle McDonald |
Year Found | 2024 |
Location Found | Pittsburgh, PA USA |
Finding Institution | University of Pittsburgh |
Program | Phage Hunters Integrating Research and Education |
From enriched soil sample? | Yes |
Isolation Temperature | 30°C |
GPS Coordinates | 40.43826 N, 79.912968 W Map |
Discovery Notes | Found next to a sidewalk under leaves and grass clippings. Plaque picture is after one day incubation. Annotated by Sophia Sliter-Hays. |
Naming Notes | Named after the shape |
Sequencing Information | |
Sequencing Complete? | Yes |
Date Sequencing Completed | Aug 14, 2024 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina |
Sequencer Used | Illumina NextSeq 1000 |
Read Type | Single-end reads |
Read Length | 100 bp |
Approximate Shotgun Coverage | 6791 |
Genome length (bp) | 39091 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 10 bases |
Overhang Sequence | TCTCCGGGTA |
GC Content | 68.4% |
Fasta file available? | Yes: Download fasta file |
Characterization | |
Cluster | EB |
Subcluster | -- |
Cluster Life Cycle | Lytic |
Other Cluster Members | |
Annotating Institution | University of Pittsburgh |
Annotation Status | In GenBank |
Plaque Notes | medium sized clear plaques |
Number of Genes | 64 |
Number of tRNAs | 2 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List | |
Submitted Minimal DNA Master File | Download |
Publication Info | |
Uploaded to GenBank? | Yes |
GenBank Accession | PQ868988 |
Refseq Number | None yet |
Archiving Info | |
Archiving status | Not in Pitt Archives |
Available Files | |
Plaque Picture | Download |
Restriction Digest Picture | Download |
GenBank File for Phamerator | Download |