| Detailed Information for Phage Strathdee |
| Discovery Information |
| Isolation Host | Microbacterium foliorum NRRL B-24224 |
| Found By | Tamara Sandouka, German A. Mercado, Samy Asraoui |
| Year Found | 2020 |
| Location Found | Ottawa, Canada |
| Finding Institution | University of Ottawa |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | No |
| Isolation Temperature | 6°C |
| GPS Coordinates | 45.403166 N, 75.642246 W Map |
| Discovery Notes | Soil taken from a plant bed next to our lab building and was extracted 2cm from below the surface. Surface of plant bed was frozen. Soil was wet and the extraction was performed immediately. |
| Naming Notes | We chose to name this phage Strathdee in honour of Steffanie A. Strathdee, co-author of "The Perfect Predator". This book is a memoir of her family's experience when her husband was on a thin line between life and death.
This book serves as a motivational reminder of what this program is all about and what we are aiming to achieve. Through smaller steps now we can learn, we can develop, we can evolve, and we can save lives in the future.
She is our inspiration, and her story is one of many, so why not do everything we can to help? |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Aug 9, 2020 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Approximate Shotgun Coverage | 1214 |
| Genome length (bp) | 41802 |
| Character of genome ends | Circularly Permuted |
| GC Content | 63.4% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | EA |
| Subcluster | EA1 |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
|
| Annotating Institution | Allegany College of Maryland |
| Annotation Status | In GenBank |
| Plaque Notes | Small, smooth, perfectly round. Bull's eye morphology can be noted under some conditions.
*Phage is thought to be lysogenic and requires more information regarding lytic characteristics. |
| Number of Genes | 63 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MZ005684 |
| Refseq Number | None yet |
| Archiving Info |
| Archiving status |
Archived |
| Pitt Freezer Box# |
128 |
| Pitt Freezer Box Grid# |
G2 |
| Available Files |
| GenBank File for Phamerator | Download |