The Actinobacteriophage Database

Add or modify phage thumbnail images to appear at the top of this page.

BLAST and GeneMark available upon entering GPS coordinates

Know something about this phage that we don't? Modify its data.

Detailed Information for Phage Clock
Discovery Information
Isolation Host	Microbacterium foliorum NRRL B-24224
Found By	Elizabeth Sullivan
Year Found	2022
Location Found	Storrs, CT United States
Finding Institution	University of Connecticut
Program	Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?	Unknown
Isolation Temperature	20°C
GPS Coordinates	Unavailable
Discovery Notes	Sample type is wet soil from a garden bed.
Naming Notes	I looked around the classroom and saw a clock, therefore I titled my phage CLOCK.
Sequencing Information
Sequencing Complete?	Yes
Date Sequencing Completed	Jan 20, 2023
Sequencing Facility	Pittsburgh Bacteriophage Institute
Shotgun Sequencing Method	Illumina Sequencing
Approximate Shotgun Coverage	2599
Genome length (bp)	41642
Character of genome ends	Circularly Permuted
GC Content	64.3%
Fasta file available?	Available upon entering GPS coordinates
Characterization
Cluster	EA
Subcluster	EA5
Cluster Life Cycle	Lytic
Other Cluster Members	Click to View Mercedes (None) Acosta (EA1) Agente005 (EA1) AlexAdler (EA1) Alyxandracam (EA1) Antoinette (EA1) AranulaLuti (EA1) Asta (EA1) Aubergine (EA1) AxiPup (EA1) Baines (EA1) Balsa (EA1) Bandik (EA1) BeautPeep30 (EA1) BeeBee8 (EA1) Benjalauren (EA1) BigRedClifford (EA1) Blage (EA1) BonesMcCoy (EA1) Bonino (EA1) Calix (EA1) Chako (EA1) Chamuel (EA1) Christoph (EA1) Clancy (EA1) Convict (EA1) Dave (EA1) Den3 (EA1) Dothraki (EA1) Duocatuli (EA1) Endor (EA1) Erla (EA1) Espinosa (EA1) Etna (EA1) Etta (EA1) Figueroism (EA1) GardenB (EA1) Garey24 (EA1) Gargoyle (EA1) Gelo (EA1) Gershwin (EA1) Greys (EA1) Gubbabump (EA1) Hamlet (EA1) HanSolo (EA1) Ilzat (EA1) Inventa (EA1) Ioannes (EA1) Janus167 (EA1) JasonD (EA1) JasperRussell (EA1) Jenos (EA1) JeriBeth (EA1) Kale (EA1) KannH (EA1) Klimt (EA1) Knox (EA1) Kurt1 (EA1) Leafus (EA1) Lovelyunicorn (EA1) Ludgate (EA1) MaeLinda (EA1) ManRay (EA1) Martin (EA1) McGalleon (EA1) MillyPhilly (EA1) MonChoix (EA1) MrWorldwide (EA1) Nagem (EA1) Nattles (EA1) Oats (EA1) Oxtober96 (EA1) Papafritta (EA1) ParleG (EA1) Peep (EA1) Peppino (EA1) Pherferi (EA1) Phireproof (EA1) PhredFlintston (EA1) Phriends (EA1) Pocket (EA1) PuppyEggo (EA1) Raccoon (EA1) Rapheph (EA1) Raptor (EA1) Redfield (EA1) Renzie (EA1) Riyhil (EA1) Robinson (EA1) Rog141 (EA1) Schnapsidee (EA1) Sedgewig (EA1) ShaiHulud (EA1) Shee (EA1) SJay (EA1) SonOfLevi (EA1) Stanktossa (EA1) StingRay (EA1) Stormbreaker8 (EA1) Strathdee (EA1) Superfresh (EA1) TatarkaPM (EA1) Teagan (EA1) TeddyBear (EA1) Tenda (EA1) Thompsone (EA1) Thorongil (EA1) TinSulphur (EA1) Velene (EA1) Vispistious (EA1) WildNOut (EA1) Winzigespinne (EA1) Zada (EA1) Juanyo (EA10) Mandalorian (EA10) Nucci (EA10) Quartz (EA10) YuuY (EA10) HerculesXL (EA11) Ixel (EA11) Schimmels22 (EA11) Tinyman4 (EA11) Andromedas (EA2) ChikPic (EA2) ColaCorta (EA2) Eleri (EA2) Finny (EA2) Glamour (EA2) MCubed (EA2) Sansa (EA2) Saratos (EA2) Zenitsu (EA2) Casey (EA3) Pajaza (EA3) Pikmin (EA3) Bustleton (EA4) Golden (EA4) Guetzie (EA4) Kauala (EA4) Koji (EA4) Lucky3 (EA4) Pherbot (EA4) PrincePhergus (EA4) Sinatra (EA4) SirVictor (EA4) Alakazam (EA5) CaptainRex (EA5) Clock (EA5) Hasitha (EA5) Librie (EA5) Nebulous (EA5) Neferthena (EA5) QuadZero (EA5) Zayuliv (EA5) Zepp (EA5) Chepli (EA6) Jemerald (EA6) Juicer (EA6) KatChan (EA6) Luna18 (EA6) Morrigan (EA6) WilliamStrong (EA6) Theresita (EA7) Schubert (EA8) Cheeto1 (EA9) ChickenKing (EA9) GaeCeo (EA9)
Annotating Institution	University of Connecticut
Annotation Status	Overdue (Expected completion by 5/1/2023)
Plaque Notes	Small, circular plaques & typically very concentrated at a single point on the Top Agar plate.
Morphotype	Siphoviridae
Has been Phamerated?	Yes
Gene List	Click to View Clock_Draft_1 Clock_Draft_2 Clock_Draft_3 Clock_Draft_4 Clock_Draft_5 Clock_Draft_6 Clock_Draft_7 Clock_Draft_8 Clock_Draft_9 Clock_Draft_10 Clock_Draft_11 Clock_Draft_12 Clock_Draft_13 Clock_Draft_14 Clock_Draft_15 Clock_Draft_16 Clock_Draft_17 Clock_Draft_18 Clock_Draft_19 Clock_Draft_20 Clock_Draft_21 Clock_Draft_22 Clock_Draft_23 Clock_Draft_24 Clock_Draft_25 Clock_Draft_26 Clock_Draft_27 Clock_Draft_28 Clock_Draft_29 Clock_Draft_30 Clock_Draft_31 Clock_Draft_32 Clock_Draft_33 Clock_Draft_34 Clock_Draft_35 Clock_Draft_36 Clock_Draft_37 Clock_Draft_38 Clock_Draft_39 Clock_Draft_40 Clock_Draft_41 Clock_Draft_42 Clock_Draft_43 Clock_Draft_44 Clock_Draft_45 Clock_Draft_46 Clock_Draft_47 Clock_Draft_48 Clock_Draft_49 Clock_Draft_50 Clock_Draft_51 Clock_Draft_52 Clock_Draft_53 Clock_Draft_54 Clock_Draft_55 Clock_Draft_56 Clock_Draft_57
Publication Info
Uploaded to GenBank?	No
GenBank Accession	None yet
Refseq Number	None yet
Archiving Info
Archiving status	Archived
Pitt Freezer Box#	162
Pitt Freezer Box Grid#	B9
Available Files
Plaque Picture	Download
EM Picture	Download

Click to View

Click to View