Microbacterium phage BigRedClifford
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Detailed Information for Phage BigRedClifford
Discovery Information
Isolation HostMicrobacterium foliorum NRRL B-24224
Found ByC. Eickstead, E. Lowry, C. Collar, L. Williams
Year Found2019
Location FoundKenosha, WI United States
Finding InstitutionCarthage College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature30°C
GPS Coordinates42.621577 N, 87.820674 W Map
Discovery NotesSample found by G. Trujillo and A. Groszek
Naming NotesNamed after Clifford the Big Red Dog
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 24, 2020
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage2624
Genome length (bp)41797
Character of genome endsCircularly Permuted
GC Content63.3%
Fasta file available?Yes: Download fasta file
Characterization
ClusterEA
SubclusterEA1
Cluster Life CycleLytic
Other Cluster Members

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Mercedes (None)

AlexAdler (EA1)

Alyxandracam (EA1)

Antoinette (EA1)

Aubergine (EA1)

AxiPup (EA1)

Baines (EA1)

Balsa (EA1)

Bandik (EA1)

BeautPeep30 (EA1)

BeeBee8 (EA1)

Benjalauren (EA1)

BigRedClifford (EA1)

BonesMcCoy (EA1)

Bonino (EA1)

Calix (EA1)

Chamuel (EA1)

Christoph (EA1)

Clancy (EA1)

Convict (EA1)

Dave (EA1)

Den3 (EA1)

Dothraki (EA1)

Espinosa (EA1)

Etna (EA1)

Etta (EA1)

Gargoyle (EA1)

Gelo (EA1)

Gershwin (EA1)

Greys (EA1)

Gubbabump (EA1)

Hamlet (EA1)

HanSolo (EA1)

Ilzat (EA1)

Ioannes (EA1)

Jenos (EA1)

Kale (EA1)

Klimt (EA1)

Knox (EA1)

Kurt1 (EA1)

Leafus (EA1)

Lovelyunicorn (EA1)

Ludgate (EA1)

MaeLinda (EA1)

ManRay (EA1)

Martin (EA1)

McGalleon (EA1)

MillyPhilly (EA1)

MonChoix (EA1)

MrWorldwide (EA1)

Nagem (EA1)

Nattles (EA1)

Oats (EA1)

Oxtober96 (EA1)

Papafritta (EA1)

ParleG (EA1)

Peep (EA1)

Peppino (EA1)

Pherferi (EA1)

Phriends (EA1)

Pocket (EA1)

PuppyEggo (EA1)

Raccoon (EA1)

Raptor (EA1)

Redfield (EA1)

Renzie (EA1)

Riyhil (EA1)

Robinson (EA1)

Schnapsidee (EA1)

Sedgewig (EA1)

Shee (EA1)

SonOfLevi (EA1)

Stanktossa (EA1)

StingRay (EA1)

Superfresh (EA1)

TatarkaPM (EA1)

Teagan (EA1)

TeddyBear (EA1)

Tenda (EA1)

Thorongil (EA1)

TinSulphur (EA1)

Velene (EA1)

WildNOut (EA1)

Winzigespinne (EA1)

Zada (EA1)

Nucci (EA10)

Quartz (EA10)

YuuY (EA10)

Ixel (EA11)

Andromedas (EA2)

ColaCorta (EA2)

Eleri (EA2)

Finny (EA2)

Glamour (EA2)

MCubed (EA2)

Sansa (EA2)

Casey (EA3)

Pajaza (EA3)

Pikmin (EA3)

Bustleton (EA4)

Golden (EA4)

Kauala (EA4)

Koji (EA4)

Lucky3 (EA4)

Pherbot (EA4)

PrincePhergus (EA4)

Sinatra (EA4)

Alakazam (EA5)

Nebulous (EA5)

Neferthena (EA5)

QuadZero (EA5)

Zayuliv (EA5)

Zepp (EA5)

Chepli (EA6)

WilliamStrong (EA6)

Theresita (EA7)

Schubert (EA8)

ChickenKing (EA9)

GaeCeo (EA9)

Annotating InstitutionCarthage College
Annotation StatusIn GenBank
Plaque NotesClear plaque with fuzzy halo and about one millimeter in diameter
Has been Phamerated?Yes
Gene List

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BigRedClifford_1

BigRedClifford_2
(terminase)

BigRedClifford_3
(portal protein)

BigRedClifford_4
(MuF-like minor capsid protein)

BigRedClifford_5
(scaffolding protein)

BigRedClifford_6
(major capsid protein)

BigRedClifford_7

BigRedClifford_8

BigRedClifford_9

BigRedClifford_10

BigRedClifford_11

BigRedClifford_12
(tail terminator)

BigRedClifford_13

BigRedClifford_14
(major tail protein)

BigRedClifford_15
(tail assembly chaperone)

BigRedClifford_16
(tail assembly chaperone)

BigRedClifford_17
(tape measure protein)

BigRedClifford_18
(minor tail protein)

BigRedClifford_19
(minor tail protein)

BigRedClifford_20

BigRedClifford_21

BigRedClifford_22

BigRedClifford_23
(minor tail protein)

BigRedClifford_24
(lysin A)

BigRedClifford_25

BigRedClifford_26
(holin)

BigRedClifford_27

BigRedClifford_28

BigRedClifford_29

BigRedClifford_30

BigRedClifford_31

BigRedClifford_32

BigRedClifford_33

BigRedClifford_34
(RepA-like helicase)

BigRedClifford_35
(nuclease)

BigRedClifford_36

BigRedClifford_37
(RecA-like DNA Recombinase)

BigRedClifford_38
(RecB-like Exonuclease/helicase)

BigRedClifford_39
(DNA polymerase I)

BigRedClifford_40

BigRedClifford_41
(DNA helicase)

BigRedClifford_42
(phosphoesterase)

BigRedClifford_43

BigRedClifford_44

BigRedClifford_45
(MazG-like nucleotide pyrophosphohydrolase)

BigRedClifford_46

BigRedClifford_47
(thymidylate kinase)

BigRedClifford_48
(glycosyltransferase)

BigRedClifford_49

BigRedClifford_50

BigRedClifford_51
(thymidylate synthase)

BigRedClifford_52

BigRedClifford_53

BigRedClifford_54

BigRedClifford_55

BigRedClifford_56

BigRedClifford_57

BigRedClifford_58

BigRedClifford_59

BigRedClifford_60

BigRedClifford_61

BigRedClifford_62

BigRedClifford_63

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMT498049
Refseq NumberNone yet
Archiving Info
Archiving status Not in Pitt Archives
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload