Gordonia phage Affeca
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Detailed Information for Phage Affeca
Discovery Information
Isolation HostGordonia terrae 3612
Found ByBrett Rosenblatt
Year Found2017
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation TemperatureNot entered
GPS Coordinates40.443889 N, 79.955556 W Map
Discovery NotesThis phage was discovered of the William Pitt Union. The ground was frozen and there was snow around the digging site. The soil I took was initially frozen but, I let it sit in an insulated compartment of bag bag.
Naming NotesThis name came from a nickname of a friend I work with. I chose this name because I felt ut was unique name that has meaning to me.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedSep 29, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1203
Genome length (bp)59156
Character of genome endsCircularly Permuted
GC Content67.5%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDE
SubclusterDE1
Cluster Life CycleLytic
Other Cluster Members
Annotation StatusIn GenBank
Plaque NotesThis phage yields round, clear plaques. This phage does , however, appear to present itself in two different sized plaques. One, the size of the tip of a pencil point, and the other about 2x the size.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List
Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMH976506
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 55
Pitt Freezer Box Grid# B9
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload