Gordonia phage YorkOnyx
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Detailed Information for Phage YorkOnyx
Discovery Information
Isolation HostGordonia terrae 3612
Found ByJerod Trexler
Year Found2019
Location FoundCheltenham, PA US
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature30°C
GPS Coordinates40.061944 N, 75.116667 W Map
Discovery NotesCollected in a Ziplock bag. Taken from soil near an airport and used 6 days later.
Naming NotesMy first pet, a cat, was named Onyx, the name was taken, so I added a city near me to the front of the name to provide uniqueness.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 8, 2020
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1393
Genome length (bp)57430
Character of genome endsCircularly Permuted
GC Content68.2%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDE
SubclusterDE1
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Plaque NotesThe plaque is mostly clear with a turbid ring around the cleared center. The plaques were larger than 2mm in diameter.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

YorkOnyx_1
(terminase small subunit)

YorkOnyx_2
(terminase large subunit)

YorkOnyx_3

YorkOnyx_4

YorkOnyx_5

YorkOnyx_6

YorkOnyx_7

YorkOnyx_8

YorkOnyx_9

YorkOnyx_10
(lipoprotein)

YorkOnyx_11

YorkOnyx_12
(portal protein)

YorkOnyx_13

YorkOnyx_14

YorkOnyx_15
(minor capsid protein)

YorkOnyx_16

YorkOnyx_17
(capsid maturation protease)

YorkOnyx_18

YorkOnyx_19
(HNH endonuclease)

YorkOnyx_20

YorkOnyx_21
(major capsid protein)

YorkOnyx_22

YorkOnyx_23

YorkOnyx_24
(major tail protein)

YorkOnyx_25

YorkOnyx_26
(esterase)

YorkOnyx_27
(head-to-tail adaptor)

YorkOnyx_28

YorkOnyx_29

YorkOnyx_30

YorkOnyx_31
(tail assembly chaperone)

YorkOnyx_32

YorkOnyx_33
(tape measure protein)

YorkOnyx_34
(minor tail protein)

YorkOnyx_35
(minor tail protein)

YorkOnyx_36

YorkOnyx_37
(minor tail protein)

YorkOnyx_38

YorkOnyx_39

YorkOnyx_40
(minor tail protein)

YorkOnyx_41

YorkOnyx_42
(lysin A)

YorkOnyx_43
(holin)

YorkOnyx_44

YorkOnyx_45

YorkOnyx_46
(lysin B)

YorkOnyx_47

YorkOnyx_48
(exonuclease)

YorkOnyx_49

YorkOnyx_50
(HNH endonuclease)

YorkOnyx_51
(RecT-like ssDNA binding protein)

YorkOnyx_52

YorkOnyx_53

YorkOnyx_54
(helix-turn-helix DNA binding domain protein)

YorkOnyx_55

YorkOnyx_56

YorkOnyx_57

YorkOnyx_58

YorkOnyx_59

YorkOnyx_60

YorkOnyx_61

YorkOnyx_62

YorkOnyx_63

YorkOnyx_64

YorkOnyx_65

YorkOnyx_66

YorkOnyx_67

YorkOnyx_68
(RuvC-like resolvase)

YorkOnyx_69

YorkOnyx_70

YorkOnyx_71

YorkOnyx_72

YorkOnyx_73

YorkOnyx_74

YorkOnyx_75

YorkOnyx_76

YorkOnyx_77

YorkOnyx_78

YorkOnyx_79

YorkOnyx_80

YorkOnyx_81

YorkOnyx_82

YorkOnyx_83
(helix-turn-helix DNA binding domain protein)

YorkOnyx_84
(DNA methylase)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMT723941
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 5x10^10
Pitt Freezer Box# 115
Pitt Freezer Box Grid# E12
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload