Gordonia phage YorkOnyx
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Detailed Information for Phage YorkOnyx
Discovery Information
Isolation HostGordonia terrae 3612
Found ByJerod Trexler
Year Found2019
Location FoundCheltenham, PA US
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature30°C
GPS Coordinates40.061944 N, 75.116667 W Map
Discovery NotesCollected in a Ziplock bag. Taken from soil near an airport and used 6 days later.
Naming NotesMy first pet, a cat, was named Onyx, the name was taken, so I added a city near me to the front of the name to provide uniqueness.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 8, 2020
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1393
Genome length (bp)57430
Character of genome endsCircularly Permuted
GC Content68.2%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDE
SubclusterDE1
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusBeing Annotated (Expected completion by 5/1/2020)
Plaque NotesThe plaque is mostly clear with a turbid ring around the cleared center. The plaques were larger than 2mm in diameter.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List
Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Archiving Info
Archiving status Not in Pitt Archives
SEA Lysate Titer 5x10^10
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload