Gordonia phage RoadKill
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Detailed Information for Phage RoadKill
Discovery Information
Isolation HostGordonia terrae CAG3
Found ByLindsay Covell, Mikahla Searles, Liz Nadeau
Year Found2018
Location FoundFarmington, ME USA
Finding InstitutionUniversity of Maine, Farmington
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature30°C
GPS Coordinates44.505928 N, 70.138217 W Map
Discovery NotesThis phage was isolated from a sewer ditch at the Farmington Wastewater Treatment Plant in Farmington, Maine.
Naming NotesIn our initial attempt to isolate a phage, we took samples from a dead squirrel that we found alongside a road. If successful in isolating a phage from this sample, we planned to name it RoadKill. Well, we didn't get a phage from that sample, so we're naming this one RoadKill in honor of the dead squirrel that helped us in our Phage Hunter's journey. Rest in peace, little squirrel.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 15, 2019
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage968
Genome length (bp)55939
Character of genome endsCircularly Permuted
GC Content67.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDE
SubclusterDE3
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUniversity of Maine, Farmington
Annotation StatusIn GenBank
Plaque NotesClear, medium-sized, round plaques.
Has been Phamerated?Yes
Gene List

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RoadKill_1

RoadKill_2
(terminase)

RoadKill_3

RoadKill_4

RoadKill_5

RoadKill_6

RoadKill_7

RoadKill_8

RoadKill_9
(lipoprotein)

RoadKill_10

RoadKill_11
(portal protein)

RoadKill_12

RoadKill_13
(MuF-like minor capsid protein)

RoadKill_14

RoadKill_15
(capsid maturation protease)

RoadKill_16

RoadKill_17

RoadKill_18
(major capsid protein)

RoadKill_19

RoadKill_20

RoadKill_21
(major tail protein)

RoadKill_22
(head-to-tail adaptor)

RoadKill_23

RoadKill_24

RoadKill_25

RoadKill_26
(tail assembly chaperone)

RoadKill_27
(tail assembly chaperone)

RoadKill_28
(tape measure protein)

RoadKill_29
(minor tail protein)

RoadKill_30
(minor tail protein)

RoadKill_31

RoadKill_32

RoadKill_33

RoadKill_34

RoadKill_35

RoadKill_36
(lysin A)

RoadKill_37
(membrane protein)

RoadKill_38
(membrane protein)

RoadKill_39
(membrane protein)

RoadKill_40

RoadKill_41

RoadKill_42

RoadKill_43
(RecE-like exonuclease)

RoadKill_44

RoadKill_45
(RecT-like ssDNA binding protein)

RoadKill_46

RoadKill_47

RoadKill_48
(helix-turn-helix DNA binding domain protein)

RoadKill_49

RoadKill_50

RoadKill_51

RoadKill_52

RoadKill_53

RoadKill_54
(lysin B)

RoadKill_55

RoadKill_56

RoadKill_57

RoadKill_58

RoadKill_59
(RuvC-like resolvase)

RoadKill_60

RoadKill_61

RoadKill_62

RoadKill_63

RoadKill_64

RoadKill_65

RoadKill_66

RoadKill_67

RoadKill_68

RoadKill_69

RoadKill_70

RoadKill_71

RoadKill_72

RoadKill_73

RoadKill_74

RoadKill_75

RoadKill_76
(DNA polymerase III subunit)

RoadKill_77
(MazG-like nucleotide pyrophosphohydrolase)

RoadKill_78

RoadKill_79

RoadKill_80

RoadKill_81

RoadKill_82

RoadKill_83

RoadKill_84
(helix-turn-helix DNA binding domain protein)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK977704
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 78
Pitt Freezer Box Grid# A10
Available Files
GenBank File for PhameratorDownload