Gordonia phage EdmundFerry
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Detailed Information for Phage EdmundFerry
Discovery Information
Isolation HostGordonia terrae 3612
Found ByThomas Fuller and Fareed Rasul
Year Found2020
Location FoundTampa Palms, FL United States
Finding InstitutionUniversity of South Florida
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature30°C
GPS Coordinates28.094444 N, 82.388333 W Map
Discovery NotesCollected from compost area near hole 14 of the golf course. Found under foliage waste. Collected at 82F (~28C). Wet conditions after rain.
Naming NotesThe name is a combination of each of our hometowns.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedDec 17, 2020
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage2394
Genome length (bp)55873
Character of genome endsCircularly Permuted
GC Content67.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDE
SubclusterDE3
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUniversity of South Florida
Annotation StatusIn GenBank
Plaque NotesCapsid: ~60nm
Tail: ~280nm
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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EdmundFerry_1
(terminase, small subunit)

EdmundFerry_2
(terminase, large subunit)

EdmundFerry_3
(ribbon-helix-helix DNA binding domain)

EdmundFerry_4

EdmundFerry_5

EdmundFerry_6

EdmundFerry_7

EdmundFerry_8

EdmundFerry_9

EdmundFerry_10
(lipoprotein)

EdmundFerry_11

EdmundFerry_12
(portal protein)

EdmundFerry_13

EdmundFerry_14
(MuF-like minor capsid protein)

EdmundFerry_15

EdmundFerry_16

EdmundFerry_17

EdmundFerry_18

EdmundFerry_19
(major capsid protein)

EdmundFerry_20

EdmundFerry_21

EdmundFerry_22
(major tail protein)

EdmundFerry_23
(head-to-tail adaptor)

EdmundFerry_24

EdmundFerry_25

EdmundFerry_26

EdmundFerry_27
(tail assembly chaperone)

EdmundFerry_28

EdmundFerry_29
(tape measure protein)

EdmundFerry_30
(minor tail protein)

EdmundFerry_31
(minor tail protein)

EdmundFerry_32

EdmundFerry_33
(minor tail protein)

EdmundFerry_34

EdmundFerry_35
(minor tail protein)

EdmundFerry_36
(lysin A, glycosyl hydrolase domain)

EdmundFerry_37
(lysin A, N-acetylmuramoyl-L-alanine amidase domain)

EdmundFerry_38

EdmundFerry_39

EdmundFerry_40
(tail needle protein)

EdmundFerry_41

EdmundFerry_42

EdmundFerry_43

EdmundFerry_44
(Cas4 family exonuclease)

EdmundFerry_45

EdmundFerry_46
(RecT-like ssDNA binding protein)

EdmundFerry_47

EdmundFerry_48

EdmundFerry_49
(helix-turn-helix DNA binding domain, MeR-like)

EdmundFerry_50
(helix-turn-helix DNA binding domain, MeR-like)

EdmundFerry_51
(RepA-like replication initiator)

EdmundFerry_52

EdmundFerry_53

EdmundFerry_54

EdmundFerry_55
(lysin B)

EdmundFerry_56

EdmundFerry_57

EdmundFerry_58
(HNH endonuclease)

EdmundFerry_59
(RuvC-like resolvase)

EdmundFerry_60

EdmundFerry_61

EdmundFerry_62

EdmundFerry_63

EdmundFerry_64

EdmundFerry_65

EdmundFerry_66

EdmundFerry_67

EdmundFerry_68

EdmundFerry_69

EdmundFerry_70

EdmundFerry_71
(helix-turn-helix DNA binding protein)

EdmundFerry_72
(polynucleotide kinase)

EdmundFerry_73
(DNA binding protein)

EdmundFerry_74

EdmundFerry_75

EdmundFerry_76

EdmundFerry_77
(DnaQ-like (DNA polymerase III subunit))

EdmundFerry_78
(MazG-like nucleotide pyrophosphohydrolase)

EdmundFerry_79

EdmundFerry_80

EdmundFerry_81

EdmundFerry_82

EdmundFerry_83

EdmundFerry_84
(ribbon-helix-helix DNA binding domain)

EdmundFerry_85
(helix-turn-helix DNA binding domain, MeR-like)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMW712725
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 118
Pitt Freezer Box Grid# E1
Available Files
EM PictureDownload
GenBank File for PhameratorDownload