Gordonia phage Nordenberg
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Detailed Information for Phage Nordenberg
Discovery Information
Isolation HostGordonia terrae 3612
Found ByDaniel Velasco
Year Found2016
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation TemperatureNot entered
GPS Coordinates40.4437 N, 79.9561 W Map
Discovery NotesThe soil sample was collected on February 2nd at 7:55 P.M. It was 44 degrees Fahrenheit at the moment of collection. In the past 24 hours of the collection, the temperature was fairly warm. It was a high of 59 degrees fahrenheit. Since the soil was collected at nighttime, the soil was soft and little cold. However, the warm temperature from the day allowed for the soil to become softer.
Naming NotesThe name for this phage came from the fact that the soil was collected right outside a building called Nordenberg Hall. I do not live in the building, but the interior of it is extremely nice and part of me wishes that I was living in it.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedAug 5, 2016
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage3348
Genome length (bp)57572
Character of genome endsCircularly Permuted
GC Content67.3%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDE
SubclusterDE1
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Plaque NotesTurbid plaques.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

Nordenberg_1

Nordenberg_2
(terminase)

Nordenberg_3

Nordenberg_4

Nordenberg_5
(lipoprotein)

Nordenberg_6

Nordenberg_7
(portal protein)

Nordenberg_8

Nordenberg_9
(minor capsid protein)

Nordenberg_10

Nordenberg_11
(capsid maturation protease)

Nordenberg_12

Nordenberg_13
(HNH endonuclease)

Nordenberg_14

Nordenberg_15
(major capsid protein)

Nordenberg_16

Nordenberg_17

Nordenberg_18
(major tail protein)

Nordenberg_19
(major capsid protein)

Nordenberg_20

Nordenberg_21
(head-to-tail adaptor)

Nordenberg_22

Nordenberg_23

Nordenberg_24

Nordenberg_25
(tail assembly chaperone)

Nordenberg_26

Nordenberg_27
(tape measure protein)

Nordenberg_28
(minor tail protein)

Nordenberg_29
(minor tail protein)

Nordenberg_30
(HNH endonuclease)

Nordenberg_31

Nordenberg_32
(minor tail protein)

Nordenberg_33

Nordenberg_34

Nordenberg_35
(HNH endonuclease)

Nordenberg_36
(lysin A)

Nordenberg_37
(membrane protein)

Nordenberg_38
(membrane protein)

Nordenberg_39
(membrane protein)

Nordenberg_40
(lysin B)

Nordenberg_41

Nordenberg_42

Nordenberg_43
(RecE-like DNA exonuclease)

Nordenberg_44

Nordenberg_45

Nordenberg_46

Nordenberg_47
(RecT-like ssDNA binding protein)

Nordenberg_48

Nordenberg_49

Nordenberg_50

Nordenberg_51

Nordenberg_52

Nordenberg_53

Nordenberg_54

Nordenberg_55

Nordenberg_56

Nordenberg_57

Nordenberg_58

Nordenberg_59

Nordenberg_60

Nordenberg_61

Nordenberg_62

Nordenberg_63

Nordenberg_64

Nordenberg_65

Nordenberg_66

Nordenberg_67
(RuvC-like resolvase)

Nordenberg_68

Nordenberg_69

Nordenberg_70

Nordenberg_71

Nordenberg_72

Nordenberg_73

Nordenberg_74

Nordenberg_75

Nordenberg_76

Nordenberg_77

Nordenberg_78

Nordenberg_79

Nordenberg_80

Nordenberg_81

Nordenberg_82

Nordenberg_83

Nordenberg_84
(DNA methylase)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMH976514
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 3
Pitt Freezer Box Grid# F2
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
Virtual Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload