Gordonia phage Jabberwocky
Know something about this phage that we don't? Modify its data.
Detailed Information for Phage Jabberwocky
Discovery Information
Isolation HostGordonia terrae 3612
Found ByLeah Knoor
Year Found2018
Location FoundGrand Rapids, MI USA
Finding InstitutionCalvin College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature30°C
GPS Coordinates43.007771 N, 85.668775 W Map
Discovery NotesThis phage was taken from wet, black soil that was rich with decaying organic matter. The soil sample was taken about ten meters from the edge of the water and 12cm below the surface at Riverside Park.
Naming NotesThis phage is named after the Jabberwock from the poem, "Jabberwocky," by Lewis Carroll. Because of the phage's aggressive nature, it is fitting for it to share its name with a monster. Additionally, the setting of the poem is similar to the location where the phage was discovered.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 15, 2019
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1501
Genome length (bp)59449
Character of genome endsCircularly Permuted
GC Content67.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDE
SubclusterDE1
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUniversity of Mary
Annotation StatusIn GenBank
Plaque NotesPlaques are consistently clear and round with sharp edges. Plaques range from 1mm to 5mm in diameter with most between 3mm and 4mm.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

Jabberwocky_1

Jabberwocky_2
(terminase)

Jabberwocky_3

Jabberwocky_4
(DNA methylase)

Jabberwocky_5

Jabberwocky_6

Jabberwocky_7
(helix-turn-helix DNA binding domain protein)

Jabberwocky_8

Jabberwocky_9

Jabberwocky_10
(membrane protein)

Jabberwocky_11
(portal protein)

Jabberwocky_12

Jabberwocky_13
(minor capsid protein)

Jabberwocky_14

Jabberwocky_15
(capsid maturation protease)

Jabberwocky_16

Jabberwocky_17

Jabberwocky_18
(major capsid protein)

Jabberwocky_19

Jabberwocky_20

Jabberwocky_21
(major tail protein)

Jabberwocky_22

Jabberwocky_23

Jabberwocky_24
(minor tail protein)

Jabberwocky_25
(head-to-tail adaptor)

Jabberwocky_26

Jabberwocky_27

Jabberwocky_28

Jabberwocky_29
(tail assembly chaperone)

Jabberwocky_30

Jabberwocky_31
(tape measure protein)

Jabberwocky_32
(minor tail protein)

Jabberwocky_33
(minor tail protein)

Jabberwocky_34

Jabberwocky_35
(minor tail protein)

Jabberwocky_36

Jabberwocky_37

Jabberwocky_38
(minor tail protein)

Jabberwocky_39

Jabberwocky_40
(lysin A)

Jabberwocky_41
(holin)

Jabberwocky_42
(membrane protein)

Jabberwocky_43

Jabberwocky_44
(lysin B)

Jabberwocky_45

Jabberwocky_46

Jabberwocky_47
(RecE-like exonuclease)

Jabberwocky_48

Jabberwocky_49
(RecT-like ssDNA binding protein)

Jabberwocky_50

Jabberwocky_51

Jabberwocky_52
(MerR-like helix-turn-helix DNA binding domain protein)

Jabberwocky_53

Jabberwocky_54

Jabberwocky_55

Jabberwocky_56

Jabberwocky_57
(membrane protein)

Jabberwocky_58

Jabberwocky_59

Jabberwocky_60

Jabberwocky_61

Jabberwocky_62

Jabberwocky_63

Jabberwocky_64

Jabberwocky_65

Jabberwocky_66

Jabberwocky_67
(RuvC-like resolvase)

Jabberwocky_68

Jabberwocky_69

Jabberwocky_70

Jabberwocky_71

Jabberwocky_72

Jabberwocky_73

Jabberwocky_74

Jabberwocky_75

Jabberwocky_76

Jabberwocky_77

Jabberwocky_78

Jabberwocky_79

Jabberwocky_80

Jabberwocky_81

Jabberwocky_82

Jabberwocky_83
(helix-turn-helix DNA binding domain protein)

Jabberwocky_84
(DNA methylase)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMN329673
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 87
Pitt Freezer Box Grid# A3
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload