Gordonia phage Tangerine
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Detailed Information for Phage Tangerine
Discovery Information
Isolation HostGordonia terrae 3612
Found ByWren Jenkins
Year Found2016
Location FoundBowling Green, KY USA
Finding InstitutionWestern Kentucky University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates36.981111 N, 86.456944 W Map
Discovery NotesPhage was discovered at 3:45 pm September 11th, 2016, at the Western Kentucky Office of Sustainability in Bowling Green, KY. Discovery Conditions were partly cloudy, with temperature 26.1 degrees Celsius (79 degrees Fahrenheit). The soil sample had medium-to-high moisture levels, and was taken from the Sustainability Office's compost pile. The sample was taken at a depth of 3 inches.
Naming NotesGordonia terrae lawns are tangerine-orange in color.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJul 3, 2017
Sequencing FacilityNC State Genomic Sciences Laboratory
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage261
Genome length (bp)57306
Character of genome endsCircularly Permuted
GC Content68.2%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDE
SubclusterDE1
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionWestern Kentucky University
Annotation StatusIn GenBank
Plaque NotesThe plaques range from the size of a pin-prick to approximately 2 millimeters. On the larger plaques, there was a completely clear area in the center surrounded by a slightly hazy halo closer to the edges.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

Tangerine_1

Tangerine_2
(terminase)

Tangerine_3

Tangerine_4

Tangerine_5

Tangerine_6
(membrane protein)

Tangerine_7

Tangerine_8

Tangerine_9

Tangerine_10
(lipoprotein)

Tangerine_11
(membrane protein)

Tangerine_12
(portal protein)

Tangerine_13

Tangerine_14

Tangerine_15
(minor capsid protein)

Tangerine_16

Tangerine_17
(capsid maturation protease)

Tangerine_18

Tangerine_19

Tangerine_20
(major capsid protein)

Tangerine_21

Tangerine_22

Tangerine_23
(major tail protein)

Tangerine_24

Tangerine_25
(esterase)

Tangerine_26
(head-to-tail adaptor)

Tangerine_27

Tangerine_28

Tangerine_29

Tangerine_30
(tail assembly chaperone)

Tangerine_31
(tail assembly chaperone)

Tangerine_32
(tape measure protein)

Tangerine_33
(minor tail protein)

Tangerine_34
(minor tail protein)

Tangerine_35

Tangerine_36

Tangerine_37

Tangerine_38

Tangerine_39

Tangerine_40

Tangerine_41
(lysin A)

Tangerine_42
(holin)

Tangerine_43
(membrane protein)

Tangerine_44
(membrane protein)

Tangerine_45
(lysin B)

Tangerine_46

Tangerine_47
(exonuclease)

Tangerine_48

Tangerine_49
(RecT-like ssDNA binding protein)

Tangerine_50

Tangerine_51

Tangerine_52
(helix-turn-helix DNA binding domain)

Tangerine_53

Tangerine_54

Tangerine_55

Tangerine_56

Tangerine_57

Tangerine_58
(membrane protein)

Tangerine_59

Tangerine_60

Tangerine_61

Tangerine_62

Tangerine_63

Tangerine_64

Tangerine_65

Tangerine_66

Tangerine_67
(RuvC-like resolvase)

Tangerine_68

Tangerine_69

Tangerine_70

Tangerine_71

Tangerine_72

Tangerine_73

Tangerine_74

Tangerine_75

Tangerine_76

Tangerine_77

Tangerine_78

Tangerine_79

Tangerine_80

Tangerine_81

Tangerine_82

Tangerine_83

Tangerine_84
(helix-turn-helix DNA binding domain)

Tangerine_85
(DNA methylase)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK967396
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Designator 2016WEKUtangerineWJ
SEA Lysate Titer 2.5 x 10^9 pfu/mL
Pitt Freezer Box# 37
Pitt Freezer Box Grid# D7
Available Files
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload