Gordonia phage Baumdotcom
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Detailed Information for Phage Baumdotcom
Discovery Information
Isolation HostGordonia terrae CAG3
Found ByGraceanne Baum
Year Found2023
Location FoundKirkwood, MO United States of America
Finding InstitutionSt. Louis Community College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature30°C
GPS Coordinates38.4647 N, 90.3908 W Map
Naming NotesMy last name is Baum and I wanted to incorporate it into the name
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedSep 5, 2023
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Sequencer UsedIllumina MiSeq
Read TypeSingle-end reads
Read Length150 bp
Approximate Shotgun Coverage243
Genome length (bp)57966
Character of genome endsCircularly Permuted
GC Content68.1%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDE
SubclusterDE1
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionSt. Louis Community College
Annotation StatusQC Complete
MorphotypeSiphoviridae
Number of Genes85
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

Click to View

Baumdotcom_1
(helix-turn-helix DNA binding domain)

Baumdotcom_2
(terminase)

Baumdotcom_3

Baumdotcom_4

Baumdotcom_5

Baumdotcom_6

Baumdotcom_7

Baumdotcom_8

Baumdotcom_9

Baumdotcom_10
(lipoprotein)

Baumdotcom_11

Baumdotcom_12
(portal protein)

Baumdotcom_13

Baumdotcom_14

Baumdotcom_15
(minor capsid protein)

Baumdotcom_16

Baumdotcom_17
(RNA ligase)

Baumdotcom_18

Baumdotcom_19

Baumdotcom_20
(major capsid hexamer protein)

Baumdotcom_21

Baumdotcom_22

Baumdotcom_23
(major tail protein)

Baumdotcom_24

Baumdotcom_25
(esterase)

Baumdotcom_26
(head-to-tail adaptor)

Baumdotcom_27

Baumdotcom_28

Baumdotcom_29
(minor capsid protein)

Baumdotcom_30
(tail assembly chaperone)

Baumdotcom_31
(tail assembly chaperone)

Baumdotcom_32
(tape measure protein)

Baumdotcom_33
(minor tail protein)

Baumdotcom_34
(minor tail protein)

Baumdotcom_35

Baumdotcom_36
(minor tail protein)

Baumdotcom_37

Baumdotcom_38

Baumdotcom_39

Baumdotcom_40
(lysin A)

Baumdotcom_41
(holin)

Baumdotcom_42

Baumdotcom_43

Baumdotcom_44
(lysin B)

Baumdotcom_45

Baumdotcom_46
(exonuclease)

Baumdotcom_47

Baumdotcom_48
(RecT-like DNA pairing protein)

Baumdotcom_49

Baumdotcom_50

Baumdotcom_51

Baumdotcom_52

Baumdotcom_53

Baumdotcom_54

Baumdotcom_55

Baumdotcom_56

Baumdotcom_57

Baumdotcom_58

Baumdotcom_59

Baumdotcom_60

Baumdotcom_61

Baumdotcom_62

Baumdotcom_63

Baumdotcom_64

Baumdotcom_65
(RuvC-like resolvase)

Baumdotcom_66

Baumdotcom_67

Baumdotcom_68

Baumdotcom_69

Baumdotcom_70

Baumdotcom_71

Baumdotcom_72

Baumdotcom_73

Baumdotcom_74

Baumdotcom_75

Baumdotcom_76

Baumdotcom_77

Baumdotcom_78

Baumdotcom_79

Baumdotcom_80

Baumdotcom_81

Baumdotcom_82

Baumdotcom_83
(DNA binding protein)

Baumdotcom_84
(DNA methyltransferase)

Baumdotcom_85

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 173
Pitt Freezer Box Grid# F9
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload