| Detailed Information for Phage Begonia | |
| Discovery Information | |
| Isolation Host | Gordonia terrae 3612 |
| Found By | Chelsea Hancock |
| Year Found | 2017 |
| Location Found | Pittsburgh, PA USA |
| Finding Institution | University of Pittsburgh |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | No |
| Isolation Temperature | 30°C |
| GPS Coordinates | 40.440464 N, 79.955696 W Map |
| Discovery Notes | Begonia was discovered in a patch of dirt next to a bike rack outside of Clapp Hall, the University of Pittsburgh biology building. There was no nearby vegetation, and on the discovery day, the weather was sunny and about 70 degrees. |
| Naming Notes | I have chose the name Begonia after a song by my favorite band, The Grateful Dead. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Nov 28, 2017 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina Sequencing |
| Genome length (bp) | 50867 |
| Character of genome ends | Unknown |
| Overhang Length | 10 bases |
| Overhang Sequence | TCTCCGGTGA |
| GC Content | 67.4% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | CV |
| Subcluster | -- |
| Cluster Life Cycle | Temperate |
| Other Cluster Members | |
| Annotation Status | Being Annotated (Expected completion by 5/15/2019) |
| Plaque Notes | Begonia produces plaques that range from 0.5 to 1.5 millimeters. Although they range in size, they are all round and completely clear. |
| Morphotype | Siphoviridae |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewBegonia_1 Begonia_2 Begonia_3 Begonia_4 Begonia_5 Begonia_6 Begonia_7 Begonia_8 Begonia_9 Begonia_10 Begonia_11 Begonia_12 Begonia_13 Begonia_14 Begonia_15 Begonia_16 Begonia_17 Begonia_18 Begonia_19 Begonia_20 Begonia_21 Begonia_22 Begonia_23 Begonia_24 Begonia_25 Begonia_26 Begonia_27 Begonia_28 Begonia_29 Begonia_30 Begonia_31 Begonia_32 Begonia_33 Begonia_34 Begonia_35 Begonia_36 Begonia_37 Begonia_38 Begonia_39 Begonia_40 Begonia_41 Begonia_42 Begonia_43 Begonia_44 Begonia_45 Begonia_46 Begonia_47 Begonia_48 Begonia_49 Begonia_50 Begonia_51 Begonia_52 Begonia_53 Begonia_54 Begonia_55 Begonia_56 Begonia_57 Begonia_58 Begonia_59 Begonia_60 Begonia_61 Begonia_62 Begonia_63 Begonia_64 Begonia_65 Begonia_66 Begonia_67 Begonia_68 Begonia_69 Begonia_70 Begonia_71 Begonia_72 Begonia_73 Begonia_74 Begonia_75 Begonia_76 Begonia_77 |
| Publication Info | |
| Uploaded to GenBank? | No |
| GenBank Accession | None yet |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| SEA Lysate Titer | 6.6 x 10^10 pfu / mL |
| Pitt Freezer Box# | 56 |
| Pitt Freezer Box Grid# | H7 |
| Available Files | |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
