Detailed Information for Phage Begonia | |
Discovery Information | |
Isolation Host | Gordonia terrae 3612 |
Found By | Chelsea Hancock |
Year Found | 2017 |
Location Found | Pittsburgh, PA United States Of America |
Finding Institution | University of Pittsburgh |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | No |
Isolation Temperature | 30°C |
GPS Coordinates | 40.440464 N, 79.955696 W Map |
Discovery Notes | Begonia was discovered in a patch of dirt next to a bike rack outside of Clapp Hall, the University of Pittsburgh biology building. There was no nearby vegetation, and on the discovery day, the weather was sunny and about 70 degrees. |
Naming Notes | I have chose the name Begonia after a song by my favorite band, The Grateful Dead. |
Sequencing Information | |
Sequencing Complete? | Yes |
Date Sequencing Completed | Nov 28, 2017 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina Sequencing |
Genome length (bp) | 50867 |
Character of genome ends | Unknown |
Overhang Length | 10 bases |
Overhang Sequence | TCTCCGGTGA |
GC Content | 67.4% |
Fasta file available? | Yes: Download fasta file |
Characterization | |
Cluster | CV |
Subcluster | -- |
Cluster Life Cycle | Temperate |
Other Cluster Members | |
Annotation Status | Being Annotated (Expected completion by 5/15/2019) |
Plaque Notes | Begonia produces plaques that range from 0.5 to 1.5 millimeters. Although they range in size, they are all round and completely clear. |
Morphotype | Siphoviridae |
Has been Phamerated? | Yes |
Gene List |
Click to ViewBegonia_1 Begonia_2 Begonia_3 Begonia_4 Begonia_5 Begonia_6 Begonia_7 Begonia_8 Begonia_9 Begonia_10 Begonia_11 Begonia_12 Begonia_13 Begonia_14 Begonia_15 Begonia_16 Begonia_17 Begonia_18 Begonia_19 Begonia_20 Begonia_21 Begonia_22 Begonia_23 Begonia_24 Begonia_25 Begonia_26 Begonia_27 Begonia_28 Begonia_29 Begonia_30 Begonia_31 Begonia_32 Begonia_33 Begonia_34 Begonia_35 Begonia_36 Begonia_37 Begonia_38 Begonia_39 Begonia_40 Begonia_41 Begonia_42 Begonia_43 Begonia_44 Begonia_45 Begonia_46 Begonia_47 Begonia_48 Begonia_49 Begonia_50 Begonia_51 Begonia_52 Begonia_53 Begonia_54 Begonia_55 Begonia_56 Begonia_57 Begonia_58 Begonia_59 Begonia_60 Begonia_61 Begonia_62 Begonia_63 Begonia_64 Begonia_65 Begonia_66 Begonia_67 Begonia_68 Begonia_69 Begonia_70 Begonia_71 Begonia_72 Begonia_73 Begonia_74 Begonia_75 Begonia_76 Begonia_77 |
Publication Info | |
Uploaded to GenBank? | No |
GenBank Accession | None yet |
Refseq Number | None yet |
Archiving Info | |
Archiving status | Archived |
SEA Lysate Titer | 6.6 x 10^10 pfu / mL |
Pitt Freezer Box# | 56 |
Pitt Freezer Box Grid# | H7 |
Available Files | |
Plaque Picture | Download |
Restriction Digest Picture | Download |