Gordonia phage Hitter
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Detailed Information for Phage Hitter
Discovery Information
Isolation HostGordonia terrae 3612
Found ByEnrique Garcia-Assad
Year Found2019
Location FoundPittsburgh, PA United States
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature30°C
GPS Coordinates40.434668 N, 79.952122 W Map
Discovery NotesFound in a sample taken from a tree-lined median in the middle of a residential street.
Naming NotesNamed after a song by artist Travis Scott called "Highest in the Room"
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 6, 2020
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage2168
Genome length (bp)47297
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceTCTCCGGTGA
GC Content67.4%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCV
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Plaque NotesClearings are turbid - clear in appearance (more turbid in lower concentrations), and circular measuring about 2-3 mm in diameter.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Hitter_1
(terminase small subunit)

Hitter_2
(terminase large subunit)

Hitter_3
(portal protein)

Hitter_4
(capsid maturation protease)

Hitter_5
(scaffolding protein)

Hitter_6
(major capsid protein)

Hitter_7

Hitter_8
(head-to-tail adaptor)

Hitter_9
(head-to-tail stopper)

Hitter_10

Hitter_11

Hitter_12

Hitter_13
(tail terminator)

Hitter_14
(major tail protein)

Hitter_15
(tail assembly chaperone)

Hitter_16
(tail assembly chaperone)

Hitter_17
(tape measure protein)

Hitter_18

Hitter_19
(minor tail protein)

Hitter_20
(lysin A, L-Ala-D-Glu peptidase domain)

Hitter_21
(lysin A, glycosyl hydrolase domain)

Hitter_22
(holin)

Hitter_23

Hitter_24

Hitter_25
(lysin B)

Hitter_26

Hitter_27
(minor tail protein)

Hitter_28
(minor tail protein)

Hitter_29

Hitter_30
(minor tail protein)

Hitter_31

Hitter_32

Hitter_33

Hitter_34

Hitter_35

Hitter_36
(RelB-like antitoxin)

Hitter_37
(RelE-like toxin)

Hitter_38

Hitter_39
(helix-turn-helix DNA binding domain protein)

Hitter_40

Hitter_41
(tyrosine integrase)

Hitter_42

Hitter_43
(immunity repressor)

Hitter_44
(excise)

Hitter_45

Hitter_46

Hitter_47

Hitter_48

Hitter_49

Hitter_50

Hitter_51
(helix-turn-helix DNA binding domain protein)

Hitter_52

Hitter_53

Hitter_54

Hitter_55

Hitter_56

Hitter_57
(dnaQ-like DNA polymerase III subunit)

Hitter_58
(exonuclease)

Hitter_59
(RecT-like ssDNA binding protein)

Hitter_60

Hitter_61

Hitter_62

Hitter_63

Hitter_64

Hitter_65

Hitter_66

Hitter_67

Hitter_68

Hitter_69

Hitter_70

Hitter_71

Hitter_72

Hitter_73
(RuvC-like resolvase)

Hitter_74

Hitter_75
(helix-turn-helix DNA binding domain protein)

Hitter_76

Hitter_77

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMT723936
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 114
Pitt Freezer Box Grid# E1
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload