Gordonia phage Fairfaxidum
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Detailed Information for Phage Fairfaxidum
Discovery Information
Isolation HostGordonia terrae 3612
Found ByAdam Persello
Year Found2017
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature30°C
GPS Coordinates40.444449 N, 79.952562 W Map
Discovery NotesDuring the time the soil was collected, the weather was above freezing and humid. The temperature was about 45 degrees and it was cloudy. This made it quite easy to scoop up the dirt.
Naming NotesName from childhood street.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMay 18, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage2030
Genome length (bp)50187
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceTCGCCGGTGA
GC Content66.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCV
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotation StatusIn GenBank
Plaque NotesPlaques tend to be medium sized (~1-2mm) and are somewhat cloudy. Sometimes the plaques vary somewhat in size.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Fairfaxidum_1
(terminase, small subunit)

Fairfaxidum_1

Fairfaxidum_2
(terminase, large subunit)

Fairfaxidum_2

Fairfaxidum_3
(portal protein)

Fairfaxidum_3

Fairfaxidum_4
(capsid maturation protease)

Fairfaxidum_4

Fairfaxidum_5
(scaffolding protein)

Fairfaxidum_5

Fairfaxidum_6
(major capsid protein)

Fairfaxidum_6

Fairfaxidum_7

Fairfaxidum_7

Fairfaxidum_8
(head-to-tail adaptor)

Fairfaxidum_8

Fairfaxidum_9
(head-to-tail stopper)

Fairfaxidum_9

Fairfaxidum_10

Fairfaxidum_10

Fairfaxidum_11

Fairfaxidum_11

Fairfaxidum_12

Fairfaxidum_12

Fairfaxidum_13
(tail terminator)

Fairfaxidum_13

Fairfaxidum_14
(major tail protein)

Fairfaxidum_14

Fairfaxidum_15
(tail assembly chaperone)

Fairfaxidum_16
(tail assembly chaperone)

Fairfaxidum_15

Fairfaxidum_16

Fairfaxidum_17
(tape measure protein)

Fairfaxidum_17

Fairfaxidum_18
(minor tail protein)

Fairfaxidum_18

Fairfaxidum_19
(minor tail protein)

Fairfaxidum_19

Fairfaxidum_20
(lysin A)

Fairfaxidum_20

Fairfaxidum_21
(holin)

Fairfaxidum_21

Fairfaxidum_22
(membrane protein)

Fairfaxidum_22

Fairfaxidum_23

Fairfaxidum_23

Fairfaxidum_24
(membrane protein)

Fairfaxidum_24

Fairfaxidum_25
(lysin B)

Fairfaxidum_25

Fairfaxidum_26
(minor tail protein)

Fairfaxidum_26

Fairfaxidum_27
(minor tail protein)

Fairfaxidum_27

Fairfaxidum_28
(minor tail protein)

Fairfaxidum_28

Fairfaxidum_29

Fairfaxidum_29

Fairfaxidum_30
(minor tail protein)

Fairfaxidum_30

Fairfaxidum_31
(minor tail protein)

Fairfaxidum_31

Fairfaxidum_32

Fairfaxidum_32

Fairfaxidum_33

Fairfaxidum_33

Fairfaxidum_34

Fairfaxidum_34

Fairfaxidum_35

Fairfaxidum_35

Fairfaxidum_36

Fairfaxidum_36

Fairfaxidum_37

Fairfaxidum_37

Fairfaxidum_38

Fairfaxidum_38

Fairfaxidum_39
(integrase, (S-int))

Fairfaxidum_39

Fairfaxidum_40
(helix-turn-helix DNA binding domain)

Fairfaxidum_40

Fairfaxidum_41
(metalloprotease)

Fairfaxidum_41

Fairfaxidum_42

Fairfaxidum_42

Fairfaxidum_43
(methyltransferase)

Fairfaxidum_43

Fairfaxidum_44
(immunity repressor)

Fairfaxidum_44

Fairfaxidum_45
(helix-turn-helix DNA binding domain)

Fairfaxidum_45

Fairfaxidum_46

Fairfaxidum_46

Fairfaxidum_47
(membrane protein)

Fairfaxidum_47

Fairfaxidum_48

Fairfaxidum_48

Fairfaxidum_49

Fairfaxidum_49

Fairfaxidum_50

Fairfaxidum_50

Fairfaxidum_51

Fairfaxidum_51

Fairfaxidum_52

Fairfaxidum_52

Fairfaxidum_53

Fairfaxidum_53

Fairfaxidum_54

Fairfaxidum_54

Fairfaxidum_55

Fairfaxidum_55

Fairfaxidum_56

Fairfaxidum_56

Fairfaxidum_57

Fairfaxidum_57

Fairfaxidum_58

Fairfaxidum_58

Fairfaxidum_59
(exonuclease)

Fairfaxidum_59

Fairfaxidum_60
(RecT-like ssDNA binding protein)

Fairfaxidum_60

Fairfaxidum_61

Fairfaxidum_61

Fairfaxidum_62

Fairfaxidum_62

Fairfaxidum_63

Fairfaxidum_63

Fairfaxidum_64

Fairfaxidum_64

Fairfaxidum_65

Fairfaxidum_65

Fairfaxidum_66
(membrane protein)

Fairfaxidum_66

Fairfaxidum_67

Fairfaxidum_67
(membrane protein)

Fairfaxidum_68
(membrane protein)

Fairfaxidum_68

Fairfaxidum_69

Fairfaxidum_69

Fairfaxidum_70

Fairfaxidum_70

Fairfaxidum_71

Fairfaxidum_71

Fairfaxidum_72

Fairfaxidum_72

Fairfaxidum_73
(helix-turn-helix DNA binding domain)

Fairfaxidum_73

Fairfaxidum_74

Fairfaxidum_74

Fairfaxidum_75

Fairfaxidum_75

Fairfaxidum_76

Fairfaxidum_76

Fairfaxidum_77
(RuvC-like resolvase)

Fairfaxidum_77

Fairfaxidum_78

Fairfaxidum_78

Fairfaxidum_79

Fairfaxidum_79

Fairfaxidum_80
(helix-turn-helix DNA binding domain)

Fairfaxidum_80

Fairfaxidum_81
(HNH endonuclease)

Fairfaxidum_81

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK814757
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 55
Pitt Freezer Box Grid# F8
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload