Gordonia phage Fairfaxidum
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Detailed Information for Phage Fairfaxidum
Discovery Information
Isolation HostGordonia terrae 3612
Found ByAdam Persello
Year Found2017
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature30°C
GPS Coordinates40.444449 N, 79.952562 W Map
Discovery NotesDuring the time the soil was collected, the weather was above freezing and humid. The temperature was about 45 degrees and it was cloudy. This made it quite easy to scoop up the dirt.
Naming NotesName from childhood street.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMay 18, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage2030
Genome length (bp)50187
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceTCGCCGGTGA
GC Content66.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCV
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Plaque NotesPlaques tend to be medium sized (~1-2mm) and are somewhat cloudy. Sometimes the plaques vary somewhat in size.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Fairfaxidum_1
(terminase small subunit)

Fairfaxidum_2
(terminase large subunit)

Fairfaxidum_3
(portal protein)

Fairfaxidum_4
(capsid maturation protease)

Fairfaxidum_5
(scaffolding protein)

Fairfaxidum_6
(major capsid protein)

Fairfaxidum_7

Fairfaxidum_8
(head-to-tail adaptor)

Fairfaxidum_9
(head-to-tail stopper)

Fairfaxidum_10

Fairfaxidum_11

Fairfaxidum_12

Fairfaxidum_13
(tail terminator)

Fairfaxidum_14
(major tail protein)

Fairfaxidum_15
(tail assembly chaperone)

Fairfaxidum_16
(tail assembly chaperone)

Fairfaxidum_17
(tape measure protein)

Fairfaxidum_18
(minor tail protein)

Fairfaxidum_19
(minor tail protein)

Fairfaxidum_20
(lysin A)

Fairfaxidum_21
(holin)

Fairfaxidum_22
(membrane protein)

Fairfaxidum_23

Fairfaxidum_24
(membrane protein)

Fairfaxidum_25
(lysin B)

Fairfaxidum_26
(minor tail protein)

Fairfaxidum_27
(minor tail protein)

Fairfaxidum_28
(minor tail protein)

Fairfaxidum_29

Fairfaxidum_30
(minor tail protein)

Fairfaxidum_31
(minor tail protein)

Fairfaxidum_32

Fairfaxidum_33

Fairfaxidum_34

Fairfaxidum_35

Fairfaxidum_36

Fairfaxidum_37

Fairfaxidum_38

Fairfaxidum_39
(integrase)

Fairfaxidum_40
(helix-turn-helix DNA binding domain protein)

Fairfaxidum_41
(metalloprotease)

Fairfaxidum_42

Fairfaxidum_43
(methyltransferase)

Fairfaxidum_44
(immunity repressor)

Fairfaxidum_45
(helix-turn-helix DNA binding domain protein)

Fairfaxidum_46

Fairfaxidum_47
(membrane protein)

Fairfaxidum_48

Fairfaxidum_49

Fairfaxidum_50

Fairfaxidum_51

Fairfaxidum_52

Fairfaxidum_53

Fairfaxidum_54

Fairfaxidum_55

Fairfaxidum_56

Fairfaxidum_57

Fairfaxidum_58

Fairfaxidum_59
(exonuclease)

Fairfaxidum_60
(RecT-like ssDNA binding protein)

Fairfaxidum_61

Fairfaxidum_62

Fairfaxidum_63

Fairfaxidum_64

Fairfaxidum_65

Fairfaxidum_66
(membrane protein)

Fairfaxidum_67
(membrane protein)

Fairfaxidum_68
(membrane protein)

Fairfaxidum_69

Fairfaxidum_70

Fairfaxidum_71

Fairfaxidum_72

Fairfaxidum_73
(helix-turn-helix DNA binding domain protein)

Fairfaxidum_74

Fairfaxidum_75

Fairfaxidum_76

Fairfaxidum_77
(RuvC-like resolvase)

Fairfaxidum_78

Fairfaxidum_79

Fairfaxidum_80
(helix-turn-helix DNA binding domain protein)

Fairfaxidum_81
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK814757
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 55
Pitt Freezer Box Grid# F8
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload