Gordonia phage Samba
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Detailed Information for Phage Samba
Discovery Information
Isolation HostGordonia terrae 3612
Found ByJaclyn Hwang
Year Found2017
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates40.4423 N, 79.9529 W Map
Discovery NotesSoil sample collected from a flower pot behind Asia Tea House in the Schenley Park on 9/19 at 9:20AM. The temperature was 64ยบ F and it had been sunny for most of the morning. The sample was carried around outside and into classrooms until in a book bag until taken to the lab at 3:30pm.
Naming NotesOne of my favorite latin dances.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedNov 30, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1253
Genome length (bp)51500
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceTCGCCGGTGA
GC Content67.2%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCV
Subcluster--
Cluster Life CycleTemperate
Lysogeny NotesNo lysogens.
Other Cluster Members
Annotation StatusBeing Annotated (Expected completion by 5/15/2019)
Plaque NotesThis phage typically produces plaques that are typically small (2mm), circular, and clear with a faint halo around the edges of the plaque. The halo or cloudy area results from a combination of lytic and lysogenic infections.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List
Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 4.33 x 10^10 pfu/mL
Pitt Freezer Box# 58
Pitt Freezer Box Grid# A6
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload