Gordonia phage Chickadee
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Detailed Information for Phage Chickadee
Discovery Information
Isolation HostGordonia terrae 3612
Found ByHannah Matthews, Maryann Rettig
Year Found2021
Location FoundCaddo Valley, AR United States
Finding InstitutionOuachita Baptist University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature30°C
GPS Coordinates34.179026 N, 93.079659 W Map
Discovery NotesIt was found at a chicken coop in Caddo Valley.
Naming NotesIt was named after the chicken coop where it was found.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 5, 2024
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage14602
Genome length (bp)56497
Character of genome endsCircularly Permuted
GC Content67.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDE
SubclusterDE3
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionFranklin Pierce University
Annotation StatusIn GenBank
Plaque Notes3mm and 1mm, turbid plaques with fuzzy edges
Number of Genes87
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

Click to View

Chickadee_1
(helix-turn-helix DNA binding protein)

Chickadee_2
(terminase)

Chickadee_3

Chickadee_4

Chickadee_5

Chickadee_6

Chickadee_7

Chickadee_8

Chickadee_9

Chickadee_10

Chickadee_11
(lipoprotein)

Chickadee_12

Chickadee_13
(portal protein)

Chickadee_14

Chickadee_15
(MuF-like minor capsid protein)

Chickadee_16

Chickadee_17

Chickadee_18

Chickadee_19

Chickadee_20
(major capsid protein)

Chickadee_21

Chickadee_22

Chickadee_23
(major tail protein)

Chickadee_24
(head to tail adapter)

Chickadee_25

Chickadee_26

Chickadee_27

Chickadee_28
(tail assembly chaperone)

Chickadee_29

Chickadee_30
(tape measure protein)

Chickadee_31
(minor tail protein)

Chickadee_32
(minor tail protein)

Chickadee_33

Chickadee_34
(minor tail protein)

Chickadee_35

Chickadee_36
(minor tail protein)

Chickadee_37

Chickadee_38
(endolysin)

Chickadee_39
(holin)

Chickadee_40

Chickadee_41

Chickadee_42

Chickadee_43

Chickadee_44

Chickadee_45
(RecE-like recombination exonuclease)

Chickadee_46

Chickadee_47
(RecT-like ssDNA annealing protein)

Chickadee_48

Chickadee_49

Chickadee_50
(helix-turn-helix DNA binding domain protein)

Chickadee_51
(helix-turn-helix DNA binding domain protein)

Chickadee_52

Chickadee_53

Chickadee_54

Chickadee_55

Chickadee_56

Chickadee_57

Chickadee_58

Chickadee_59

Chickadee_60

Chickadee_61

Chickadee_62
(RuvC-like resolvase)

Chickadee_63

Chickadee_64

Chickadee_65

Chickadee_66

Chickadee_67

Chickadee_68

Chickadee_69

Chickadee_70

Chickadee_71

Chickadee_72

Chickadee_73

Chickadee_74

Chickadee_75

Chickadee_76

Chickadee_77

Chickadee_78

Chickadee_79
(DnaQ-like DNA polymerase III subunit)

Chickadee_80
(MazG-like nucleotide pyrophosphohydrolase)

Chickadee_81

Chickadee_82

Chickadee_83

Chickadee_84

Chickadee_85

Chickadee_86

Chickadee_87
(DNA binding protein)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionPP978782
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 3.93 * 10^13 pfu/mL
Pitt Freezer Box# 135
Pitt Freezer Box Grid# E9
Available Files
Plaque PictureDownload
GenBank File for PhameratorDownload