Gordonia phage GrootJr
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Detailed Information for Phage GrootJr
Discovery Information
Isolation HostGordonia terrae 3612
Duplicates of this PhageFenty
Found ByKatelyn Jindra and Ashley Marsh
Year Found2019
Location FoundCrete, NE United States
Finding InstitutionDoane University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature30°C
GPS Coordinates40.6218 N, 96.9492 W Map
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 15, 2020
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage896
Genome length (bp)67176
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGCCGCGTAC
GC Content65.9%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCR
SubclusterCR2
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionDoane University
Annotation StatusIn GenBank
Plaque NotesOur phage is a siphoviridae. We also believe that our phage is a temperate phage in the lysogenic cycle.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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GrootJr_1

GrootJr_2
(terminase small subunit)

GrootJr_4

GrootJr_5

GrootJr_6

GrootJr_7

GrootJr_8

GrootJr_9

GrootJr_10

GrootJr_11
(HicA-like toxin)

GrootJr_12

GrootJr_13

GrootJr_14

GrootJr_15

GrootJr_16

GrootJr_17

GrootJr_18

GrootJr_19

GrootJr_20

GrootJr_21
(lysin B)

GrootJr_22

GrootJr_23

GrootJr_24

GrootJr_25
(HNH endonuclease)

GrootJr_26
(terminase large subunit)

GrootJr_27
(portal protein)

GrootJr_28
(MuF-like minor capsid protein)

GrootJr_29

GrootJr_30
(LamD-like capsid decoration protein)

GrootJr_31
(major capsid protein)

GrootJr_32

GrootJr_33

GrootJr_34

GrootJr_35

GrootJr_36

GrootJr_37
(major tail protein)

GrootJr_38

GrootJr_39
(tail assembly chaperone)

GrootJr_40
(tail assembly chaperone)

GrootJr_41
(tape measure protein)

GrootJr_42
(minor tail protein)

GrootJr_43
(minor tail protein)

GrootJr_44
(minor tail protein)

GrootJr_45
(minor tail protein)

GrootJr_46

GrootJr_47

GrootJr_48

GrootJr_49
(lysin A, protease C39 domain)

GrootJr_50
(lysin A, glycosyl hydrolase domain)

GrootJr_51
(holin)

GrootJr_52

GrootJr_53

GrootJr_54
(DNA primase/polymerase)

GrootJr_55

GrootJr_56
(WhiB family transcription factor)

GrootJr_57

GrootJr_58
(MerR-like helix-turn-helix DNA binding domain protein)

GrootJr_59
(RuvC-like resolvase)

GrootJr_60

GrootJr_61

GrootJr_62
(DnaE-like DNA polymerase III)

GrootJr_63

GrootJr_64

GrootJr_65
(thioredoxin)

GrootJr_66

GrootJr_67
(AAA-ATPase)

GrootJr_68
(Cas4 family exonuclease)

GrootJr_69

GrootJr_70

GrootJr_71

GrootJr_72

GrootJr_73

GrootJr_74
(DNA helicase)

GrootJr_75
(WhiB family transcription factor)

GrootJr_76

GrootJr_77

GrootJr_78

GrootJr_79

GrootJr_80

GrootJr_81

GrootJr_82

GrootJr_83

GrootJr_84

GrootJr_85

GrootJr_86

GrootJr_87

GrootJr_88

GrootJr_89

GrootJr_90

GrootJr_91

GrootJr_92

GrootJr_93

GrootJr_94

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMT986025
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 107
Pitt Freezer Box Grid# H12
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload