Gordonia phage NadineRae
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Detailed Information for Phage NadineRae
Discovery Information
Isolation HostGordonia terrae CAG3
Found ByRobin Kutsi
Year Found2018
Location FoundCotton, MN USA
Finding InstitutionCollege of St. Scholastica
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation Temperature15°C
GPS Coordinates47.14375 N, 92.45176 W Map
Discovery NotesSample came from fairly dry, grassy soil (about top 3 cm). There are free range rabbits running around in the area and a horse pasture a few feet away.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedNov 30, 2018
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage248
Genome length (bp)64714
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGCCGCGTAC
GC Content66.1%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCR
SubclusterCR4
Cluster Life CycleLytic
Lysogeny NotesLytic phage.
Other Cluster Members
Annotating InstitutionCollege of St. Scholastica
Annotation StatusQC Complete
Plaque NotesCircular, clear plaques with a radius of 0.5 mm.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

NadineRae_1
(terminase, small subunit)

NadineRae_2

NadineRae_3

NadineRae_4

NadineRae_5

NadineRae_6

NadineRae_7
(toxin in toxin/antitoxin system, HicA-like)

NadineRae_8

NadineRae_9

NadineRae_10

NadineRae_11

NadineRae_12

NadineRae_13

NadineRae_14

NadineRae_15
(membranel Protein)

NadineRae_16
(Membrane protein)

NadineRae_17
(Lysin B)

NadineRae_18
(MazG-like nucleotide pyrophosphohydrolase)

NadineRae_19

NadineRae_20

NadineRae_21

NadineRae_22

NadineRae_23
(HNH endonuclease)

NadineRae_24
(terminase, large subunit)

NadineRae_25
(portal protein)

NadineRae_26
(capsid maturation protease)

NadineRae_27
(scaffolding protein)

NadineRae_28
(capsid decoration protein, LamD-like)

NadineRae_29
(major capsid protein)

NadineRae_30

NadineRae_31
(head-to-tail adaptor)

NadineRae_32

NadineRae_33

NadineRae_34
(head-to-tail adaptor)

NadineRae_35
(major tail protein)

NadineRae_36

NadineRae_37
(tail assembly chaperone)

NadineRae_38
(tail assembly chaperone)

NadineRae_39
(tape measure protein)

NadineRae_40
(minor tail protein)

NadineRae_41
(minor tail protein)

NadineRae_42
(minor tail protein)

NadineRae_43
(minor tail protein)

NadineRae_44

NadineRae_45

NadineRae_46

NadineRae_47
(lysin A, protease C39 domain)

NadineRae_48
(lysin A, glycosyl hydrolase domain)

NadineRae_49
(holin)

NadineRae_50
(membrane protein)

NadineRae_51
(membrane protein)

NadineRae_52
(DNA primase/polymerase)

NadineRae_53

NadineRae_54
(WhiB family transcription factor)

NadineRae_55

NadineRae_56
(helix-turn-helix DNA binding domain, MerR-like)

NadineRae_57
(RuvC-like resolvase)

NadineRae_58

NadineRae_59
(DnaE-like DNA polymerase III (alpha))

NadineRae_60

NadineRae_61

NadineRae_62

NadineRae_63
(thioredoxin)

NadineRae_64

NadineRae_65
(RecA-like recombinase)

NadineRae_66

NadineRae_67
(Cas4 family exonuclease)

NadineRae_68

NadineRae_69

NadineRae_70

NadineRae_71
(helicase)

NadineRae_72
(WhiB family transcription factor)

NadineRae_73

NadineRae_74

NadineRae_75

NadineRae_76

NadineRae_77

NadineRae_78

NadineRae_79

NadineRae_80

NadineRae_81

NadineRae_82

NadineRae_83

NadineRae_84

NadineRae_85

NadineRae_86

NadineRae_87

NadineRae_88

NadineRae_89

NadineRae_90

NadineRae_91

NadineRae_92

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 74
Pitt Freezer Box Grid# H10
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload