Gordonia phage Turuncu
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Detailed Information for Phage Turuncu
Discovery Information
Isolation HostGordonia terrae 3612
Found ByRaelys L. DeLeon-Fernandez
Year Found2016
Location FoundSan Juan, PR Puerto Rico
Finding InstitutionUniversity of Puerto Rico at Cayey
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS Coordinates18.1956 N, 66.02122 W Map
Discovery NotesSemi Humid
Partly Cloudy
Naming NotesOrange in Turkish
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedDec 16, 2016
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1864
Genome length (bp)66808
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGCCGCGTAC
GC Content65.4%
Sequencing NotesThere were two slight variations seen in the sequencing reads for this genome.

About 40% of the population has an "A" instead of the called "C" at position 35059.

Also about 40% of the population has a fifth G in the run of Gs beginning at 53722, instead of the called 4 Gs.
Fasta file available?Yes: Download fasta file
Characterization
ClusterCR
SubclusterCR1
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUniversity of Puerto Rico at Cayey
Annotation StatusIn GenBank
Plaque NotesClear Small
Has been Phamerated?Yes
Gene List

Click to View

Turuncu_1

Turuncu_2

Turuncu_3

Turuncu_4

Turuncu_5

Turuncu_6
(membrane protein)

Turuncu_7

Turuncu_8

Turuncu_9
(HicA-like toxin)

Turuncu_10

Turuncu_11

Turuncu_12

Turuncu_13

Turuncu_14
(membrane protein)

Turuncu_15

Turuncu_16

Turuncu_17

Turuncu_18

Turuncu_19

Turuncu_20
(membrane protein)

Turuncu_21

Turuncu_22
(lysin B)

Turuncu_23

Turuncu_24

Turuncu_25

Turuncu_26

Turuncu_27
(HNH endonuclease)

Turuncu_28
(terminase)

Turuncu_29
(portal protein)

Turuncu_30
(MuF-like minor capsid protein)

Turuncu_31

Turuncu_32
(LamD-like capsid decoration protein)

Turuncu_33
(major capsid protein)

Turuncu_34

Turuncu_35

Turuncu_36

Turuncu_37

Turuncu_38

Turuncu_39
(major tail protein)

Turuncu_40

Turuncu_41
(tail assembly chaperone)

Turuncu_42
(tail assembly chaperone)

Turuncu_43
(tape measure protein)

Turuncu_44
(minor tail protein)

Turuncu_45
(minor tail protein)

Turuncu_46
(minor tail protein)

Turuncu_47
(minor tail protein)

Turuncu_48

Turuncu_49

Turuncu_50

Turuncu_51

Turuncu_52
(lysin A, protease C39 domain)

Turuncu_53
(lysin A, glycosyl hydrolase domain)

Turuncu_54
(holin)

Turuncu_55
(membrane protein)

Turuncu_56

Turuncu_57
(DNA primase/polymerase)

Turuncu_58

Turuncu_59
(WhiB family transcription factor)

Turuncu_60

Turuncu_61
(HTH DNA binding protein)

Turuncu_62

Turuncu_63
(DNA polymerase III (alpha))

Turuncu_64

Turuncu_65

Turuncu_66
(thioredoxin)

Turuncu_67

Turuncu_68
(AAA-ATPase)

Turuncu_69
(nuclease)

Turuncu_70

Turuncu_71

Turuncu_72

Turuncu_73

Turuncu_74

Turuncu_75
(helicase)

Turuncu_76
(WhiB family transcription factor)

Turuncu_77

Turuncu_78

Turuncu_79

Turuncu_80

Turuncu_81

Turuncu_82

Turuncu_83

Turuncu_84

Turuncu_85

Turuncu_86

Turuncu_87

Turuncu_88

Turuncu_89

Turuncu_90

Turuncu_91

Turuncu_92

Turuncu_93

Turuncu_94

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMH744424
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 2.33 X 10^11
Pitt Freezer Box# 46
Pitt Freezer Box Grid# B8
Available Files
GenBank File for PhameratorDownload