Gordonia phage Commandaria
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Detailed Information for Phage Commandaria
Discovery Information
Isolation HostGordonia terrae 3612
Found ByAndreas Stephanou and Sam Weafer
Year Found2019
Location FoundUnity, ME United States
Finding InstitutionUniversity of Maine, Honors College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation Temperature24°C
GPS Coordinates44.588105 N, 69.295799 W Map
Discovery Notes2-3 inches depth
Raised garden that was growing mustard in the common ground fair
Naming NotesOldest wine in the world that is still being produced
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 5, 2021
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage641
Genome length (bp)68064
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGCCGCGTAC
GC Content66.2%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCR
SubclusterCR2
Cluster Life CycleLytic
Lysogeny NotesDoes not form lysogens
Other Cluster Members
Annotating InstitutionSaint Joseph's University
Annotation StatusIn GenBank
Plaque NotesClear and round. Varied size (1-3.5 mm)
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

Commandaria_1
(terminase small subunit)

Commandaria_2

Commandaria_3

Commandaria_4

Commandaria_5

Commandaria_6

Commandaria_7

Commandaria_8
(HicA-like toxin)

Commandaria_9

Commandaria_10

Commandaria_11

Commandaria_12

Commandaria_13

Commandaria_14

Commandaria_15

Commandaria_16

Commandaria_17

Commandaria_18

Commandaria_19

Commandaria_20
(lysin B)

Commandaria_21
(MazG-like nucleotide pyrophosphohydrolase)

Commandaria_22

Commandaria_23
(minor tail protein)

Commandaria_24

Commandaria_25
(HNH endonuclease)

Commandaria_26
(terminase large subunit)

Commandaria_27
(portal protein)

Commandaria_28

Commandaria_29
(scaffolding protein)

Commandaria_30
(LamD-like capsid decoration protein)

Commandaria_31
(major capsid protein)

Commandaria_32

Commandaria_33
(head-to-tail adaptor)

Commandaria_34
(head-to-tail stopper)

Commandaria_35

Commandaria_36
(tail terminator)

Commandaria_37
(major tail protein)

Commandaria_38

Commandaria_39
(tail assembly chaperone)

Commandaria_40
(tail assembly chaperone)

Commandaria_41
(tape measure protein)

Commandaria_42
(minor tail protein)

Commandaria_43
(minor tail protein)

Commandaria_44
(minor tail protein)

Commandaria_45
(minor tail protein)

Commandaria_46
(minor tail protein)

Commandaria_47

Commandaria_48
(lysin A, protease C39 domain)

Commandaria_49
(lysin A, glycosyl hydrolase domain)

Commandaria_50
(holin)

Commandaria_51

Commandaria_52

Commandaria_53
(DNA primase/polymerase/helicase)

Commandaria_54

Commandaria_55
(WhiB family transcription factor)

Commandaria_56

Commandaria_57
(helix-turn-helix DNA binding domain protein)

Commandaria_58
(RuvC-like resolvase)

Commandaria_59

Commandaria_60

Commandaria_61
(DnaE-like DNA polymerase III alpha)

Commandaria_62

Commandaria_63

Commandaria_64
(thioredoxin)

Commandaria_65

Commandaria_66
(RecA-like DNA recombinase)

Commandaria_67
(Cas4 exonuclease)

Commandaria_68

Commandaria_69

Commandaria_70

Commandaria_71

Commandaria_72
(DNA helicase)

Commandaria_73
(WhiB family transcription factor)

Commandaria_74

Commandaria_75

Commandaria_76

Commandaria_77
(helix-turn-helix DNA binding domain protein)

Commandaria_78

Commandaria_79

Commandaria_80

Commandaria_81

Commandaria_82

Commandaria_83

Commandaria_84

Commandaria_85

Commandaria_86

Commandaria_87

Commandaria_88

Commandaria_89

Commandaria_90

Commandaria_91

Commandaria_92

Commandaria_93

Commandaria_94

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionOQ709208
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 109
Pitt Freezer Box Grid# E11
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload