Gordonia phage Yndexa
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Detailed Information for Phage Yndexa
Discovery Information
Isolation HostGordonia terrae 3612
Found ByIngrid N. DeLeon-Ruiz
Year Found2017
Location FoundYabucoa, PR USA
Finding InstitutionUniversity of Puerto Rico at Cayey
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates18.082541 N, 65.839178 W Map
Discovery NotesSoil was rich and humid.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedAug 28, 2018
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1437
Genome length (bp)66184
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGCCGCGTAC
GC Content66.2%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCR
SubclusterCR4
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUniversity of Puerto Rico at Cayey
Annotation StatusIn GenBank
Plaque NotesTurbid plaques
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Yndexa_1
(terminase small subunit)

Yndexa_2

Yndexa_3

Yndexa_4

Yndexa_5

Yndexa_6

Yndexa_7
(HicA-like toxin)

Yndexa_8

Yndexa_9

Yndexa_10

Yndexa_11

Yndexa_12
(membrane protein)

Yndexa_13

Yndexa_14

Yndexa_15
(membrane protein)

Yndexa_16

Yndexa_17

Yndexa_18

Yndexa_19
(lysin B)

Yndexa_20
(MazG-like nucleotide pyrophosphohydrolase)

Yndexa_21
(membrane protein)

Yndexa_22

Yndexa_23
(minor tail protein)

Yndexa_24

Yndexa_25
(HNH endonuclease)

Yndexa_26
(terminase large subunit)

Yndexa_27
(portal protein)

Yndexa_28
(capsid maturation protease and MuF-like fusion protein)

Yndexa_29
(scaffolding protein)

Yndexa_30
(LamD-like capsid decoration protein)

Yndexa_31
(major capsid protein)

Yndexa_32

Yndexa_33
(head-to-tail adaptor)

Yndexa_34

Yndexa_35

Yndexa_36
(tail terminator)

Yndexa_37
(major tail protein)

Yndexa_38

Yndexa_39
(tail assembly chaperone)

Yndexa_40
(tail assembly chaperone)

Yndexa_41
(tape measure protein)

Yndexa_42
(minor tail protein)

Yndexa_43
(minor tail protein)

Yndexa_44
(minor tail protein)

Yndexa_45
(minor tail protein)

Yndexa_46
(minor tail protein)

Yndexa_47

Yndexa_48
(lysin A, protease C39 domain)

Yndexa_49
(lysin A, glycosyl hydrolase domain)

Yndexa_50
(holin)

Yndexa_51
(membrane protein)

Yndexa_52
(membrane protein)

Yndexa_53
(DNA primase/polymerase)

Yndexa_54

Yndexa_55
(WhiB family transcription factor)

Yndexa_56

Yndexa_57
(MerR-like helix-turn-helix DNA binding domain protein)

Yndexa_58
(RuvC-like resolvase)

Yndexa_59

Yndexa_60
(DnaE-like DNA polymerase III (alpha))

Yndexa_61

Yndexa_62

Yndexa_63

Yndexa_64
(thioredoxin)

Yndexa_65

Yndexa_66
(RecA-like DNA recombinase)

Yndexa_67
(RecB-like exonuclease/helicase)

Yndexa_68

Yndexa_69

Yndexa_70

Yndexa_71
(DNA helicase)

Yndexa_72
(WhiB family transcription factor)

Yndexa_73

Yndexa_74
(membrane protein)

Yndexa_75

Yndexa_76

Yndexa_77

Yndexa_78

Yndexa_79

Yndexa_80

Yndexa_81

Yndexa_82

Yndexa_83

Yndexa_84

Yndexa_85

Yndexa_86

Yndexa_87

Yndexa_88

Yndexa_89

Yndexa_90

Yndexa_91

Yndexa_92

Yndexa_93

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMN369766
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 72
Pitt Freezer Box Grid# F8
Available Files
GenBank File for PhameratorDownload