Gordonia phage IDyn
IDyn Plaque Picture
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Detailed Information for Phage IDyn
Discovery Information
Isolation HostGordonia terrae 3612
Found ByJailyn Gales
Year Found2017
Location FoundDurham, NC USA
Finding InstitutionDurham Technical Community College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation TemperatureNot entered
GPS Coordinates36.025519 N, 78.8945 W Map
Discovery NotesThe initial soil sample was collected by Heather Aloor (biology instructor), who had an abundance of phage present on her direct isolate plate. I adopted a phage and used it as my own.
Naming NotesThe name is a combination of two family member names.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedDec 18, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage142
Genome length (bp)65218
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGCCGCGTAC
GC Content66.2%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCR
SubclusterCR4
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionDurham Technical Community College
Annotation StatusIn GenBank
Plaque NotesThe intial phage was 2mm in length, after a series of plaque assays, the sized varied between 2mm and 3mm.
Has been Phamerated?Yes
Gene List

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IDyn_1
(HNH endonuclease)

IDyn_2
(terminase small subunit)

IDyn_3

IDyn_4

IDyn_5

IDyn_6

IDyn_7

IDyn_8
(HicA-like toxin)

IDyn_9

IDyn_10

IDyn_11

IDyn_12
(membrane protein)

IDyn_13

IDyn_14

IDyn_15

IDyn_16

IDyn_17
(membrane protein)

IDyn_18
(lysin B)

IDyn_19
(MazG-like nucleotide pyrophosphohydrolase)

IDyn_20
(membrane protein)

IDyn_21

IDyn_22
(major tail protein)

IDyn_23

IDyn_24
(HNH endonuclease)

IDyn_25
(terminase large subunit)

IDyn_26
(portal protein)

IDyn_27
(capsid maturation protease)

IDyn_28
(scaffolding protein)

IDyn_29
(capsid decoration protein)

IDyn_30
(major capsid protein)

IDyn_31

IDyn_32
(head-to-tail adaptor)

IDyn_33

IDyn_34

IDyn_35
(tail terminator)

IDyn_36
(major tail protein)

IDyn_37

IDyn_38
(tail assembly chaperone)

IDyn_39
(tail assembly chaperone)

IDyn_40
(tape measure protein)

IDyn_41
(minor tail protein)

IDyn_42
(minor tail protein)

IDyn_43
(minor tail protein)

IDyn_44
(minor tail protein)

IDyn_45
(minor tail protein)

IDyn_46
(minor tail protein)

IDyn_47

IDyn_48
(lysin A, protease C39 domain)

IDyn_49
(lysin A, glycosyl hydrolase domain)

IDyn_50
(holin)

IDyn_51
(membrane protein)

IDyn_52
(membrane protein)

IDyn_53
(DNA primase/polymerase)

IDyn_54

IDyn_55
(WhiB family transcription factor)

IDyn_56

IDyn_57
(MerR-like helix-turn-helix DNA binding domain)

IDyn_58
(RuvC-like resolvase)

IDyn_59
(DnaE-like DNA polymerase III (alpha))

IDyn_60

IDyn_61

IDyn_62

IDyn_63

IDyn_64
(AAA-ATPase)

IDyn_65
(nuclease)

IDyn_66

IDyn_67

IDyn_68

IDyn_69
(DNA helicase)

IDyn_70
(WhiB family transcription factor)

IDyn_71

IDyn_72

IDyn_73

IDyn_74

IDyn_75

IDyn_76

IDyn_77

IDyn_78

IDyn_79

IDyn_80

IDyn_81

IDyn_82

IDyn_83

IDyn_84

IDyn_85

IDyn_86

IDyn_87

IDyn_88

IDyn_89

IDyn_90

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK433272
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 3.66x10^8
Pitt Freezer Box# 49
Pitt Freezer Box Grid# D12
Available Files
GenBank File for PhameratorDownload