Gordonia phage Jifall16
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Detailed Information for Phage Jifall16
Discovery Information
Isolation HostGordonia terrae 3612
Former namesFourteen10
Found ByAnna Pitts
Year Found2016
Location FoundKenosha, WI United States Of America
Finding InstitutionCarthage College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates42.625181 N, 87.894101 W Map
Discovery NotesDirt with fertilizers present, north portion of Jerry Smith pumpkin farm. A field where dill was previously grown. Field is non-GMO
Naming Notesthe name of the phage is from one of the lab partners children's ages.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 24, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage2007
Genome length (bp)67470
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGCCGCGTAC
GC Content65.8%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCR
SubclusterCR2
Cluster Life CycleLytic
Other Cluster Members
Annotation StatusIn GenBank
Plaque Notessmall and medium (with a 2:1 ratio of smaller to medium), plaques sizing from 1 cm to a pinpoint. All plaques clear.
Has been Phamerated?Yes
Gene List

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Jifall16_1
(terminase small subunit)

Jifall16_2

Jifall16_3

Jifall16_4

Jifall16_5

Jifall16_6

Jifall16_7

Jifall16_8
(HicA-like toxin)

Jifall16_9

Jifall16_10

Jifall16_11

Jifall16_12

Jifall16_13

Jifall16_14

Jifall16_15

Jifall16_16

Jifall16_17

Jifall16_18
(lysin B)

Jifall16_19

Jifall16_20
(minor tail protein)

Jifall16_21

Jifall16_22
(HNH endonuclease)

Jifall16_23
(terminase large subunit)

Jifall16_24
(portal protein)

Jifall16_25
(capsid maturation protease)

Jifall16_26
(scaffolding protein)

Jifall16_27
(capsid decoration protein)

Jifall16_28
(major capsid protein)

Jifall16_29

Jifall16_30

Jifall16_31

Jifall16_32

Jifall16_33

Jifall16_34
(major tail protein)

Jifall16_35

Jifall16_36
(tail assembly chaperone)

Jifall16_37
(tail assembly chaperone)

Jifall16_38
(tape measure protein)

Jifall16_39
(minor tail protein)

Jifall16_40
(minor tail protein)

Jifall16_41
(minor tail protein)

Jifall16_42
(minor tail protein)

Jifall16_43

Jifall16_44

Jifall16_45

Jifall16_46
(lysin A, peptidase domain)

Jifall16_47
(lysin A, glycosyl hydrolase domain)

Jifall16_48
(holin)

Jifall16_49
(membrane protein)

Jifall16_50
(membrane protein)

Jifall16_51
(DNA primase/polymerase)

Jifall16_52

Jifall16_53
(WhiB family transcription factor)

Jifall16_54

Jifall16_55
(MerR-like HTH DNA-binding protein)

Jifall16_56
(RuvC-like resolvase)

Jifall16_57

Jifall16_58

Jifall16_59
(DnaE-like DNA polymerase III (alpha))

Jifall16_60

Jifall16_61

Jifall16_62
(thioredoxin)

Jifall16_63

Jifall16_64
(AAA-ATPase)

Jifall16_65

Jifall16_66
(nuclease)

Jifall16_67

Jifall16_68

Jifall16_69

Jifall16_70

Jifall16_71
(DNA helicase)

Jifall16_72
(WhiB family transcription factor)

Jifall16_73

Jifall16_74

Jifall16_75

Jifall16_76

Jifall16_77

Jifall16_78

Jifall16_79

Jifall16_80

Jifall16_81

Jifall16_82

Jifall16_83

Jifall16_84

Jifall16_85

Jifall16_86

Jifall16_87

Jifall16_88

Jifall16_89

Jifall16_90

Jifall16_91

Jifall16_92

Jifall16_93

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMH779508
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 33
Pitt Freezer Box Grid# A9
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload