Gordonia phage Jalammah
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Detailed Information for Phage Jalammah
Discovery Information
Isolation HostGordonia terrae 3612
Found ByJacobAntonello EmmaGarris HannaAlamo LaurenFrank
Year Found2020
Location FoundPittsburgh, PA United States
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature30°C
GPS Coordinates40.43 N, 79.96 W Map
Discovery NotesDiscovered by Jacob Antonello, Emma Garris, Hanna Alamo, and Lauren Frank in bio lab BIOSC 0058-1855 at University of Pittsburgh under instructor Rebecca Bortz, in September 2020. Phage soil samples gathered at 3322 Juliet St. in Pittsburgh by Lauren Frank for the specified lab course.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 20, 2021
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage829
Genome length (bp)51552
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceTCGCCGGTGA
GC Content67.1%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCV
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Number of Genes82
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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Jalammah_1
(terminase small subunit)

Jalammah_2
(terminase large subunit)

Jalammah_3
(portal protein)

Jalammah_4
(capsid maturation protease)

Jalammah_5
(scaffolding protein)

Jalammah_6
(major capsid protein)

Jalammah_7

Jalammah_8
(head-to-tail adaptor)

Jalammah_9
(head-to-tail stopper)

Jalammah_10

Jalammah_11

Jalammah_12

Jalammah_13

Jalammah_14
(tail terminator)

Jalammah_15
(major tail protein)

Jalammah_16
(tail assembly chaperone)

Jalammah_17
(tail assembly chaperone)

Jalammah_18
(HNH endonuclease)

Jalammah_19
(tape measure protein)

Jalammah_20
(minor tail protein)

Jalammah_21
(minor tail protein)

Jalammah_22
(lysin A, L-Ala-D-Glu peptidase domain)

Jalammah_23
(lysin A, glycosyl hydrolase domain)

Jalammah_24
(holin)

Jalammah_25

Jalammah_26

Jalammah_27
(lysin B)

Jalammah_28

Jalammah_29
(minor tail protein)

Jalammah_30
(minor tail protein)

Jalammah_31

Jalammah_32
(minor tail protein)

Jalammah_33
(acetyltransferase)

Jalammah_34

Jalammah_35

Jalammah_36

Jalammah_37

Jalammah_38
(RelB-like antitoxin)

Jalammah_39
(RelE-like toxin)

Jalammah_40

Jalammah_41

Jalammah_42
(serine integrase)

Jalammah_43
(helix-turn-helix DNA-binding domain protein)

Jalammah_44
(helix-turn-helix DNA-binding domain protein)

Jalammah_45
(immunity repressor)

Jalammah_46
(helix-turn-helix DNA-binding domain protein)

Jalammah_47

Jalammah_48
(antirepressor)

Jalammah_49

Jalammah_50

Jalammah_51

Jalammah_52

Jalammah_53

Jalammah_54
(helix-turn-helix DNA-binding domain protein)

Jalammah_55

Jalammah_56

Jalammah_57

Jalammah_58

Jalammah_59

Jalammah_60
(DnaQ-like DNA polymerase III subunit)

Jalammah_61
(RecE-like exonuclease)

Jalammah_62
(RecT-like ssDNA binding protein)

Jalammah_63

Jalammah_64

Jalammah_65

Jalammah_66

Jalammah_67

Jalammah_68
(nucleotidyltransferase)

Jalammah_69

Jalammah_70

Jalammah_71

Jalammah_72

Jalammah_73
(HNH endonuclease)

Jalammah_74

Jalammah_75

Jalammah_76

Jalammah_77

Jalammah_78
(RuvC-like resolvase)

Jalammah_79

Jalammah_80

Jalammah_81

Jalammah_82
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMZ150785
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 125
Pitt Freezer Box Grid# E12
Available Files
Plaque PictureDownload
GenBank File for PhameratorDownload