Gordonia phage KappaFarmDelta
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Detailed Information for Phage KappaFarmDelta
Discovery Information
Isolation HostGordonia rubripertincta NRRL B-16540
Duplicates of this PhageMontero, UziFAB
Found BySophie Grace, Palmer Wright, Catherine Loftus
Year Found2021
Location FoundLincolm, NE United States
Finding InstitutionUniversity of Nebraska-Lincoln
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature30°C
GPS Coordinates40.81937 N, 96.69705 W Map
Discovery NotesThese phage were found in the backyard of the Kappa Kappa Gamma house on UNL's campus. It was found in the middle of a construction site. It was 2.5 inches deep, and the ambient temperature was 85 degrees (Farenheit).
Naming NotesWe are all in a sorority/fraternity, so we combined Kappa Kappa Gamma, Farmhouse, and Kappa Delta.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 21, 2022
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1075
Genome length (bp)49606
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceTCGCCGGTGA
GC Content67.3%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCV
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUniversity of Nebraska-Lincoln
Annotation StatusIn GenBank
Plaque NotesWe believe we have a temperate phage, since the plaques are turbid.
Number of Genes81
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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KappaFarmDelta_1
(terminase small subunit)

KappaFarmDelta_2
(terminase large subunit)

KappaFarmDelta_3
(portal protein)

KappaFarmDelta_4
(capsid maturation protease)

KappaFarmDelta_5
(scaffolding protein)

KappaFarmDelta_6
(major capsid protein)

KappaFarmDelta_7

KappaFarmDelta_8
(head-to-tail adaptor)

KappaFarmDelta_9
(head-to-tail stopper)

KappaFarmDelta_10

KappaFarmDelta_11

KappaFarmDelta_12

KappaFarmDelta_13
(tail terminator)

KappaFarmDelta_14
(major tail protein)

KappaFarmDelta_15
(tail assembly chaperone)

KappaFarmDelta_16
(tail assembly chaperone)

KappaFarmDelta_17
(tape measure protein)

KappaFarmDelta_18
(minor tail protein)

KappaFarmDelta_19
(minor tail protein)

KappaFarmDelta_20
(lysin A, L-Ala-D-Glu peptidase domain)

KappaFarmDelta_21

KappaFarmDelta_22
(lysin A, glycosyl hydrolase domain)

KappaFarmDelta_23
(holin)

KappaFarmDelta_24

KappaFarmDelta_25

KappaFarmDelta_26

KappaFarmDelta_27
(lysin B)

KappaFarmDelta_28

KappaFarmDelta_29
(minor tail protein)

KappaFarmDelta_30
(minor tail protein)

KappaFarmDelta_31

KappaFarmDelta_32
(minor tail protein)

KappaFarmDelta_33
(hydrolase)

KappaFarmDelta_34

KappaFarmDelta_35

KappaFarmDelta_36

KappaFarmDelta_37

KappaFarmDelta_38

KappaFarmDelta_39

KappaFarmDelta_40
(serine integrase)

KappaFarmDelta_41
(helix-turn-helix DNA binding protein)

KappaFarmDelta_42
(helix-turn-helix DNA binding protein)

KappaFarmDelta_43
(immunity repressor)

KappaFarmDelta_44
(helix-turn-helix DNA binding protein)

KappaFarmDelta_45

KappaFarmDelta_46
(antirepressor)

KappaFarmDelta_47

KappaFarmDelta_48

KappaFarmDelta_49

KappaFarmDelta_50

KappaFarmDelta_51

KappaFarmDelta_52

KappaFarmDelta_53

KappaFarmDelta_54

KappaFarmDelta_55

KappaFarmDelta_56

KappaFarmDelta_57

KappaFarmDelta_58

KappaFarmDelta_59
(exonuclease)

KappaFarmDelta_60
(RecT-like ssDNA binding protein)

KappaFarmDelta_61

KappaFarmDelta_62

KappaFarmDelta_63

KappaFarmDelta_64

KappaFarmDelta_65

KappaFarmDelta_66
(nucleotidyltransferase)

KappaFarmDelta_67

KappaFarmDelta_68
(DNA methyltransferase)

KappaFarmDelta_69

KappaFarmDelta_70

KappaFarmDelta_71

KappaFarmDelta_72

KappaFarmDelta_73

KappaFarmDelta_74
(RuvC-like resolvase)

KappaFarmDelta_75

KappaFarmDelta_76

KappaFarmDelta_77
(helix-turn-helix DNA binding protein)

KappaFarmDelta_78

KappaFarmDelta_79

KappaFarmDelta_80

KappaFarmDelta_81
(HNH endonuclease)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionON970567
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 137
Pitt Freezer Box Grid# F7
Available Files
GenBank File for PhameratorDownload