Detailed Information for Phage KappaFarmDelta |
Discovery Information |
Isolation Host | Gordonia rubripertincta NRRL B-16540 |
Duplicates of this Phage | Montero, UziFAB |
Found By | Sophie Grace, Palmer Wright, Catherine Loftus |
Year Found | 2021 |
Location Found | Lincolm, NE United States |
Finding Institution | University of Nebraska-Lincoln |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Yes |
Isolation Temperature | 30°C |
GPS Coordinates | 40.81937 N, 96.69705 W Map |
Discovery Notes | These phage were found in the backyard of the Kappa Kappa Gamma house on UNL's campus. It was found in the middle of a construction site. It was 2.5 inches deep, and the ambient temperature was 85 degrees (Farenheit). |
Naming Notes | We are all in a sorority/fraternity, so we combined Kappa Kappa Gamma, Farmhouse, and Kappa Delta. |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Jan 21, 2022 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina Sequencing |
Approximate Shotgun Coverage | 1075 |
Genome length (bp) | 49606 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 10 bases |
Overhang Sequence | TCGCCGGTGA |
GC Content | 67.3% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | CV |
Subcluster | -- |
Cluster Life Cycle | Temperate |
Other Cluster Members |
|
Annotating Institution | University of Nebraska-Lincoln |
Annotation Status | In GenBank |
Plaque Notes | We believe we have a temperate phage, since the plaques are turbid. |
Number of Genes | 81 |
Number of tRNAs | 0 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List |
|
Submitted Annotation in DNA Master Format | Download |
Submitted Minimal DNA Master File | Download |
Author List | Download |
Annotation Cover Sheet | Download |
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | ON970567 |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Archived |
Pitt Freezer Box# |
137 |
Pitt Freezer Box Grid# |
F7 |
Available Files |
GenBank File for Phamerator | Download |