Gordonia phage Kewpiedoll
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Detailed Information for Phage Kewpiedoll
Discovery Information
Isolation HostGordonia terrae NRRL B-16283
Found ByLaura JoAn Powell, Umar Sahi and Hari Kotturi
Year Found2018
Location FoundSanta Rosa, NM USA
Finding InstitutionUniversity of Central Oklahoma
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation TemperatureNot entered
GPS Coordinates34.966389 N, 104.87 W Map
Discovery NotesSoil was collected from a farm in Santa Rosa New Mexico.
Naming NotesThe virus is named after Laura's sister, Lorena. Her eyes reminded people of a Kewpie doll.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMar 18, 2019
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage859
Genome length (bp)59473
Character of genome endsCircularly Permuted
GC Content67.7%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDE
SubclusterDE1
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionLa Salle University
Annotation StatusIn GenBank
Plaque NotesPlaque has a clear center with a halo. It is approximately 2mm in diameter with the halo.
MorphotypeSiphoviridae
Number of Genes86
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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Kewpiedoll_1
(terminase small subunit)

Kewpiedoll_2
(terminase large subunit)

Kewpiedoll_3

Kewpiedoll_4

Kewpiedoll_5

Kewpiedoll_6

Kewpiedoll_7

Kewpiedoll_8

Kewpiedoll_9

Kewpiedoll_10

Kewpiedoll_11
(lipoprotein)

Kewpiedoll_12

Kewpiedoll_13
(portal protein)

Kewpiedoll_14

Kewpiedoll_15

Kewpiedoll_16
(minor capsid protein)

Kewpiedoll_17

Kewpiedoll_18
(RNA ligase)

Kewpiedoll_19

Kewpiedoll_20

Kewpiedoll_21
(major capsid protein)

Kewpiedoll_22

Kewpiedoll_23

Kewpiedoll_24
(major tail protein)

Kewpiedoll_25
(LipC-like lipase)

Kewpiedoll_26
(head-to-tail adaptor)

Kewpiedoll_27

Kewpiedoll_28

Kewpiedoll_29

Kewpiedoll_30
(tail assembly chaperone)

Kewpiedoll_31

Kewpiedoll_32
(tape measure protein)

Kewpiedoll_33
(minor tail protein)

Kewpiedoll_34
(minor tail protein)

Kewpiedoll_35

Kewpiedoll_36
(minor tail protein)

Kewpiedoll_37

Kewpiedoll_38

Kewpiedoll_39
(minor tail protein)

Kewpiedoll_40

Kewpiedoll_41
(lysin A)

Kewpiedoll_42

Kewpiedoll_43

Kewpiedoll_44

Kewpiedoll_45
(lysin B)

Kewpiedoll_46

Kewpiedoll_47

Kewpiedoll_48
(exonuclease)

Kewpiedoll_49

Kewpiedoll_50

Kewpiedoll_51
(HNH endonuclease)

Kewpiedoll_52
(RecT-like DNA pairing protein)

Kewpiedoll_53

Kewpiedoll_54

Kewpiedoll_55
(helix-turn-helix DNA binding domain protein)

Kewpiedoll_56

Kewpiedoll_57

Kewpiedoll_58

Kewpiedoll_59

Kewpiedoll_60

Kewpiedoll_61

Kewpiedoll_62

Kewpiedoll_63

Kewpiedoll_64

Kewpiedoll_65

Kewpiedoll_66

Kewpiedoll_67
(RuvC-like resolvase)

Kewpiedoll_68

Kewpiedoll_69

Kewpiedoll_70

Kewpiedoll_71

Kewpiedoll_72

Kewpiedoll_73

Kewpiedoll_74

Kewpiedoll_75

Kewpiedoll_76

Kewpiedoll_77
(DNA binding protein)

Kewpiedoll_78

Kewpiedoll_79

Kewpiedoll_80

Kewpiedoll_81

Kewpiedoll_82

Kewpiedoll_83

Kewpiedoll_84

Kewpiedoll_85
(helix-turn-helix DNA binding domain protein)

Kewpiedoll_86
(DNA methyltransferase)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionOP172877
Refseq NumberNone yet
Archiving Info
Archiving status Not in Pitt Archives
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload